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Arsenic in PDB 1fe8: Crystal Structure of the Von Willebrand Factor A3 Domain in Complex with A Fab Fragment of Igg RU5 That Inhibits Collagen Binding

Protein crystallography data

The structure of Crystal Structure of the Von Willebrand Factor A3 Domain in Complex with A Fab Fragment of Igg RU5 That Inhibits Collagen Binding, PDB code: 1fe8 was solved by B.Bouma, E.G.Huizinga, M.E.Schiphorst, J.J.Sixma, J.Kroon, P.Gros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.90 / 2.03
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.800, 183.600, 131.800, 90.00, 116.20, 90.00
R / Rfree (%) 22.7 / 26.4

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of the Von Willebrand Factor A3 Domain in Complex with A Fab Fragment of Igg RU5 That Inhibits Collagen Binding (pdb code 1fe8). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of the Von Willebrand Factor A3 Domain in Complex with A Fab Fragment of Igg RU5 That Inhibits Collagen Binding, PDB code: 1fe8:

Arsenic binding site 1 out of 1 in 1fe8

Go back to Arsenic Binding Sites List in 1fe8
Arsenic binding site 1 out of 1 in the Crystal Structure of the Von Willebrand Factor A3 Domain in Complex with A Fab Fragment of Igg RU5 That Inhibits Collagen Binding


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of the Von Willebrand Factor A3 Domain in Complex with A Fab Fragment of Igg RU5 That Inhibits Collagen Binding within 5.0Å range:
probe atom residue distance (Å) B Occ
L:As1001

b:47.9
occ:1.00
AS L:CAC1001 0.0 47.9 1.0
O2 L:CAC1001 1.6 47.0 1.0
O1 L:CAC1001 1.6 44.0 1.0
C2 L:CAC1001 1.9 44.2 1.0
C1 L:CAC1001 1.9 43.7 1.0
O L:HOH1114 4.0 50.8 1.0
NZ L:LYS142 4.3 41.1 1.0
O L:HOH1058 4.4 34.1 1.0
CD L:LYS142 4.6 40.5 1.0
CD2 L:TRP163 4.7 29.3 1.0
CE3 L:TRP163 4.8 28.1 1.0
CE2 L:TRP163 4.8 30.1 1.0
CE L:LYS142 4.9 41.9 1.0
OD1 L:ASP143 5.0 29.9 1.0
CG L:TRP163 5.0 29.9 1.0

Reference:

R.A.Romijn, B.Bouma, W.Wuyster, P.Gros, J.Kroon, J.J.Sixma, E.G.Huizinga. Identification of the Collagen-Binding Site of the Von Willebrand Factor A3-Domain. J.Biol.Chem. V. 276 9985 2001.
ISSN: ISSN 0021-9258
PubMed: 11098050
DOI: 10.1074/JBC.M006548200
Page generated: Tue Oct 27 16:46:28 2020

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