Atomistry » Arsenic » PDB 1glj-1pqu » 1hyz
Atomistry »
  Arsenic »
    PDB 1glj-1pqu »
      1hyz »

Arsenic in PDB 1hyz: Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.

Enzymatic activity of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.

All present enzymatic activity of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.:
2.7.7.49;

Protein crystallography data

The structure of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium., PDB code: 1hyz was solved by V.Molteni, J.Greenwald, D.Rhodes, Y.Hwang, W.Kwiatkowski, F.D.Bushman, J.S.Siegel, S.Choe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.00 / 2.30
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.220, 72.220, 65.160, 90.00, 90.00, 120.00
R / Rfree (%) 23.7 / 29.1

Other elements in 1hyz:

The structure of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium. (pdb code 1hyz). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 4 binding sites of Arsenic where determined in the Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium., PDB code: 1hyz:
Jump to Arsenic binding site number: 1; 2; 3; 4;

Arsenic binding site 1 out of 4 in 1hyz

Go back to Arsenic Binding Sites List in 1hyz
Arsenic binding site 1 out of 4 in the Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As65

b:50.1
occ:0.80
 AS A:CAF65 0.0 50.1 0.8
SG A:CAF65 2.3 44.0 0.8
CB A:CAF65 3.2 56.8 0.2
CB A:CAF65 3.3 42.2 0.8
OD1 A:ASN120 3.3 45.2 1.0
N A:CAF65 3.7 38.2 0.8
CG A:ASN120 3.7 47.4 1.0
ND2 A:ASN120 3.7 45.0 1.0
N A:CAF65 3.7 56.3 0.2
OE1 A:GLU92 3.8 57.2 0.8
O A:HOH307 3.8 43.8 1.0
O A:HOH348 3.9 53.6 1.0
CA A:CAF65 3.9 57.8 0.2
CA A:CAF65 4.0 41.5 0.8
SG A:CAF65 4.1 54.4 0.2
CG A:GLU92 4.2 56.9 0.8
C A:ASP64 4.2 36.4 0.8
C A:ASP64 4.2 54.7 0.2
CD A:GLU92 4.5 56.7 0.8
OG1 A:THR97 4.6 30.0 1.0
CB A:ASN120 4.7 44.5 1.0
O A:ASP64 4.7 35.5 0.8
O A:ASP64 4.7 55.0 0.2
CA A:ASP64 4.8 35.7 0.8
CG A:GLU92 4.8 62.1 0.2
CA A:ASP64 4.8 53.9 0.2
O A:HOH337 4.9 50.4 1.0

Arsenic binding site 2 out of 4 in 1hyz

Go back to Arsenic Binding Sites List in 1hyz
Arsenic binding site 2 out of 4 in the Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As65

b:38.9
occ:0.20
 AS A:CAF65 0.0 38.9 0.2
OE1 A:GLU92 1.6 57.2 0.8
OE2 A:GLU92 1.9 56.8 0.8
CD A:GLU92 1.9 56.7 0.8
CE1 A:HIS67 2.1 59.1 0.8
SG A:CAF65 2.1 54.4 0.2
CE1 A:HIS67 2.2 66.2 0.2
NE2 A:HIS67 2.5 66.4 0.2
NE2 A:HIS67 2.6 59.6 0.8
CB A:CAF65 3.1 56.8 0.2
ND1 A:HIS67 3.3 58.1 0.8
CG A:GLU92 3.3 56.9 0.8
O A:HOH348 3.3 53.6 1.0
ND1 A:HIS67 3.4 65.9 0.2
CB A:CAF65 3.4 42.2 0.8
OE1 A:GLU92 3.7 63.1 0.2
CD2 A:HIS67 3.7 65.8 0.2
CD A:GLU92 3.8 63.1 0.2
CD2 A:HIS67 3.9 57.8 0.8
CG A:HIS67 4.2 65.3 0.2
OE2 A:GLU92 4.2 62.9 0.2
CG A:HIS67 4.2 57.5 0.8
CG A:GLU92 4.3 62.1 0.2
SG A:CAF65 4.4 44.0 0.8
CG1 A:VAL72 4.4 46.5 1.0
C A:CAF65 4.5 44.6 0.8
CB A:GLU92 4.5 57.0 0.8
CA A:CAF65 4.5 57.8 0.2
CB A:GLU92 4.5 60.8 0.2
CA A:CAF65 4.5 41.5 0.8
N A:THR66 4.6 61.0 0.2
C A:CAF65 4.6 59.6 0.2
O A:CAF65 4.7 45.1 0.8
CG2 A:VAL72 4.7 47.8 1.0
N A:THR66 4.8 46.2 0.8

Arsenic binding site 3 out of 4 in 1hyz

Go back to Arsenic Binding Sites List in 1hyz
Arsenic binding site 3 out of 4 in the Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As130

b:44.1
occ:1.00
 AS A:CAF130 0.0 44.1 1.0
SG A:CAF130 2.3 29.2 1.0
CB A:CAF130 3.1 25.4 1.0
CG2 A:ILE135 4.2 29.6 1.0
O A:ILE135 4.3 33.3 1.0
N A:GLN137 4.3 53.7 1.0
C A:LYS136 4.4 48.7 1.0
CB A:GLN137 4.5 59.0 1.0
CA A:CAF130 4.6 28.7 1.0
O A:LYS136 4.6 45.3 1.0
CA A:GLN137 4.6 60.0 1.0
CB A:ILE135 4.6 33.2 1.0
C A:ILE135 4.7 35.6 1.0
CA A:LYS136 4.8 47.1 1.0
CD2 A:PHE121 4.8 39.7 1.0
CG1 A:VAL126 4.9 29.6 1.0
CG A:PHE121 5.0 38.8 1.0

Arsenic binding site 4 out of 4 in 1hyz

Go back to Arsenic Binding Sites List in 1hyz
Arsenic binding site 4 out of 4 in the Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 4 of Hiv Integrase Core Domain Complexed with A Derivative of Tetraphenyl Arsonium. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As304

b:79.7
occ:0.50
 AS A:TTO304 0.0 79.7 0.5
C1 A:TTO304 1.9 79.4 0.5
C6 A:TTO304 2.8 81.6 0.5
C2 A:TTO304 2.9 81.3 0.5
O A:GLN168 3.7 63.3 1.0
C3 A:TTO304 4.1 82.2 0.5
C5 A:TTO304 4.2 82.1 0.5
C A:GLN168 4.5 63.8 1.0
O A:HOH380 4.6 50.7 1.0
C4 A:TTO304 4.7 79.6 0.5

Reference:

V.Molteni, J.Greenwald, D.Rhodes, Y.Hwang, W.Kwiatkowski, F.D.Bushman, J.S.Siegel, S.Choe. Identification of A Small-Molecule Binding Site at the Dimer Interface of the Hiv Integrase Catalytic Domain. Acta Crystallogr.,Sect.D V. 57 536 2001.
ISSN: ISSN 0907-4449
PubMed: 11264582
DOI: 10.1107/S0907444901001652
Page generated: Wed Jul 10 11:05:08 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy