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Arsenic in PDB 1jod: Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212

Protein crystallography data

The structure of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212, PDB code: 1jod was solved by P.Smith, J.F.Hunt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.128, 89.128, 158.982, 90.00, 90.00, 90.00
R / Rfree (%) 25.6 / 32.6

Other elements in 1jod:

The structure of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 also contains other interesting chemical elements:

Zinc (Zn) 22 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 (pdb code 1jod). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 4 binding sites of Arsenic where determined in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212, PDB code: 1jod:
Jump to Arsenic binding site number: 1; 2; 3; 4;

Arsenic binding site 1 out of 4 in 1jod

Go back to Arsenic Binding Sites List in 1jod
Arsenic binding site 1 out of 4 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As351

b:33.1
occ:1.00
AS A:CAC351 0.0 33.1 1.0
O2 A:CAC351 1.8 13.0 1.0
O1 A:CAC351 1.8 25.7 1.0
C2 A:CAC351 2.0 24.7 1.0
C1 A:CAC351 2.0 23.2 1.0
ZN A:ZN303 3.0 49.5 1.0
OD2 A:ASP120 3.6 31.6 1.0
ZN A:ZN304 3.9 45.0 1.0
OE2 B:GLU1247 4.0 38.9 1.0
NE2 A:GLN124 4.1 50.9 1.0
ZN B:ZN322 4.2 47.5 1.0
OD1 A:ASP190 4.4 47.0 1.0
OH A:TYR240 4.6 28.6 1.0
CG A:ASP120 4.8 35.6 1.0
CB A:LEU121 4.8 11.3 1.0
CD B:GLU1247 4.9 45.3 1.0
CG A:PRO189 4.9 23.5 1.0

Arsenic binding site 2 out of 4 in 1jod

Go back to Arsenic Binding Sites List in 1jod
Arsenic binding site 2 out of 4 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As352

b:41.0
occ:1.00
AS A:CAC352 0.0 41.0 1.0
O2 A:CAC352 1.8 46.7 1.0
O1 A:CAC352 1.8 33.0 1.0
C2 A:CAC352 2.0 45.3 1.0
C1 A:CAC352 2.0 47.5 1.0
ZN A:ZN311 2.6 78.3 1.0
OD1 A:ASP104 3.1 39.3 1.0
OD2 A:ASP166 3.1 17.1 1.0
OD2 A:ASP104 3.4 42.5 1.0
CG A:ASP104 3.4 45.3 1.0
CG A:ASP166 3.6 18.1 1.0
N A:ASP104 3.6 41.4 1.0
OD1 A:ASP166 3.8 13.9 1.0
O A:ASP166 4.3 32.3 1.0
ND2 A:ASN261 4.3 21.9 1.0
O A:HOH530 4.3 4.3 1.0
CB A:ASP166 4.6 11.9 1.0
CA A:ASP166 4.7 15.8 1.0
CB A:ASP104 4.7 44.7 1.0
CA A:ASP104 4.8 41.8 1.0
C A:ASP166 4.9 20.0 1.0

Arsenic binding site 3 out of 4 in 1jod

Go back to Arsenic Binding Sites List in 1jod
Arsenic binding site 3 out of 4 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As354

b:51.8
occ:1.00
AS A:CAC354 0.0 51.8 1.0
O2 A:CAC354 1.8 32.7 1.0
O1 A:CAC354 1.9 50.1 1.0
C2 A:CAC354 2.0 34.7 1.0
C1 A:CAC354 2.0 45.2 1.0
ZN A:ZN314 3.1 34.8 1.0
ZN A:ZN321 3.7 61.7 1.0
ZN A:ZN315 3.9 45.3 1.0
OE2 A:GLU247 3.9 35.9 1.0
O A:HOH515 4.6 33.0 1.0
CD A:GLU247 5.0 37.6 1.0

Arsenic binding site 4 out of 4 in 1jod

Go back to Arsenic Binding Sites List in 1jod
Arsenic binding site 4 out of 4 in the Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 4 of Crystal Structure of Murine Olfactory Marker Protein in Spacegroup P43212 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As353

b:33.3
occ:1.00
AS B:CAC353 0.0 33.3 1.0
O2 B:CAC353 1.8 20.6 1.0
O1 B:CAC353 1.8 11.9 1.0
C2 B:CAC353 2.0 2.1 1.0
C1 B:CAC353 2.0 22.2 1.0
ZN B:ZN320 3.1 90.9 1.0
OD1 B:ASP1104 3.3 40.7 1.0
OD2 B:ASP1166 3.4 35.8 1.0
N B:ASP1104 3.4 34.5 1.0
OD2 B:ASP1104 3.6 42.4 1.0
CG B:ASP1104 3.6 42.7 1.0
OD1 B:ASP1166 3.8 25.7 1.0
CG B:ASP1166 3.8 30.8 1.0
ND2 B:ASN1261 4.7 32.1 1.0
CA B:ASP1104 4.7 39.3 1.0
CB B:ASP1104 4.8 41.0 1.0
CA B:ASP1166 4.9 19.2 1.0
CB B:ASP1166 4.9 22.8 1.0

Reference:

P.C.Smith, S.Firestein, J.F.Hunt. The Crystal Structure of the Olfactory Marker Protein at 2.3 A Resolution. J.Mol.Biol. V. 319 807 2002.
ISSN: ISSN 0022-2836
PubMed: 12054872
DOI: 10.1016/S0022-2836(02)00242-5
Page generated: Tue Oct 27 16:46:46 2020

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