Atomistry » Arsenic » PDB 1q2o-1yhc » 1tnd
Atomistry »
  Arsenic »
    PDB 1q2o-1yhc »
      1tnd »

Arsenic in PDB 1tnd: The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S

Protein crystallography data

The structure of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S, PDB code: 1tnd was solved by J.P.Noel, H.E.Hamm, P.B.Sigler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.500, 108.300, 79.000, 90.00, 112.30, 90.00
R / Rfree (%) 19 / n/a

Other elements in 1tnd:

The structure of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S (pdb code 1tnd). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 6 binding sites of Arsenic where determined in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S, PDB code: 1tnd:
Jump to Arsenic binding site number: 1; 2; 3; 4; 5; 6;

Arsenic binding site 1 out of 6 in 1tnd

Go back to Arsenic Binding Sites List in 1tnd
Arsenic binding site 1 out of 6 in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As353

b:32.7
occ:1.00
SG A:CYS62 2.5 31.3 1.0
CB A:CYS62 3.4 22.2 1.0
O A:PRO165 3.7 12.1 1.0
O A:HOH424 3.9 16.6 1.0
CD1 B:ILE180 4.1 18.3 1.0
CG2 A:VAL164 4.4 20.9 1.0
O A:HOH549 4.5 33.8 1.0
O A:HOH370 4.5 36.4 1.0
CA A:LEU59 4.6 23.8 1.0
O A:HOH483 4.7 34.6 1.0
O A:SER58 4.7 29.5 1.0
CA A:CYS62 4.8 21.6 1.0
C A:PRO165 4.9 10.9 1.0
CD2 A:LEU59 4.9 7.9 1.0
O A:TYR57 5.0 18.4 1.0

Arsenic binding site 2 out of 6 in 1tnd

Go back to Arsenic Binding Sites List in 1tnd
Arsenic binding site 2 out of 6 in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As354

b:31.3
occ:1.00
SG A:CYS210 2.7 25.1 1.0
CB A:CYS210 3.3 19.6 1.0
CB A:VAL197 3.8 12.6 1.0
CG1 A:VAL197 4.0 8.8 1.0
CG2 A:VAL197 4.0 12.7 1.0
O A:HOH356 4.0 26.5 1.0
CD1 A:ILE180 4.1 7.1 1.0
CG1 A:ILE180 4.3 11.2 1.0
CA A:TRP207 4.4 23.2 1.0
O A:TRP207 4.5 29.4 1.0
CD1 A:TRP207 4.5 17.7 1.0
CG2 A:ILE180 4.6 10.1 1.0
CA A:CYS210 4.8 21.0 1.0
CG A:TRP207 4.9 20.7 1.0
C A:TRP207 5.0 26.1 1.0
O A:LYS206 5.0 24.4 1.0

Arsenic binding site 3 out of 6 in 1tnd

Go back to Arsenic Binding Sites List in 1tnd
Arsenic binding site 3 out of 6 in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As353

b:42.5
occ:1.00
SG B:CYS62 2.5 22.7 1.0
CB B:CYS62 3.4 13.4 1.0
O B:PRO165 3.6 21.6 1.0
O B:HOH417 4.0 17.5 1.0
O B:HOH387 4.2 37.5 1.0
CG1 B:VAL164 4.4 18.1 1.0
CA B:LEU59 4.6 21.0 1.0
O B:SER58 4.7 19.9 1.0
C B:PRO165 4.8 20.5 1.0
CA B:CYS62 4.8 16.8 1.0
O B:HOH418 4.9 28.9 1.0

Arsenic binding site 4 out of 6 in 1tnd

Go back to Arsenic Binding Sites List in 1tnd
Arsenic binding site 4 out of 6 in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 4 of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As354

b:33.8
occ:1.00
SG B:CYS210 2.6 29.7 1.0
O B:HOH432 2.8 42.0 1.0
CB B:CYS210 3.4 21.9 1.0
CB B:VAL197 3.8 20.6 1.0
CG2 B:VAL197 3.9 20.8 1.0
CG1 B:VAL197 4.1 15.4 1.0
O B:HOH366 4.1 18.0 1.0
CD1 B:ILE180 4.2 18.3 1.0
CG1 B:ILE180 4.2 25.8 1.0
O B:TRP207 4.5 24.1 1.0
CD1 B:TRP207 4.5 31.9 1.0
NZ B:LYS206 4.5 38.5 1.0
CA B:TRP207 4.6 25.0 1.0
CG2 B:ILE180 4.6 17.1 1.0
CA B:CYS210 4.8 24.1 1.0
CG B:TRP207 4.9 34.4 1.0

Arsenic binding site 5 out of 6 in 1tnd

Go back to Arsenic Binding Sites List in 1tnd
Arsenic binding site 5 out of 6 in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 5 of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As353

b:38.5
occ:1.00
SG C:CYS62 2.6 33.0 1.0
CB C:CYS62 3.2 24.4 1.0
O C:PRO165 3.5 23.1 1.0
CD1 A:ILE180 4.0 7.1 1.0
O C:HOH358 4.3 24.5 1.0
CG1 C:VAL164 4.4 11.4 1.0
CA C:LEU59 4.5 15.8 1.0
O C:SER58 4.5 24.3 1.0
CA C:CYS62 4.7 23.1 1.0
C C:PRO165 4.7 20.7 1.0
O C:HOH393 4.9 23.8 1.0
O C:LEU59 4.9 19.1 1.0
CD1 C:LEU59 4.9 9.8 1.0
O C:HOH392 5.0 38.5 1.0
N C:LEU59 5.0 18.3 1.0

Arsenic binding site 6 out of 6 in 1tnd

Go back to Arsenic Binding Sites List in 1tnd
Arsenic binding site 6 out of 6 in the The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 6 of The 2.2 Angstroms Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As354

b:32.1
occ:1.00
SG C:CYS210 2.6 30.8 1.0
CB C:CYS210 3.2 23.6 1.0
CB C:VAL197 3.8 15.9 1.0
CG2 C:VAL197 4.0 16.3 1.0
CG1 C:VAL197 4.1 14.2 1.0
CG1 C:ILE180 4.3 14.3 1.0
CD1 C:TRP207 4.3 16.0 1.0
CD1 C:ILE180 4.3 12.6 1.0
CG2 C:ILE180 4.4 15.2 1.0
O C:HOH376 4.4 18.1 1.0
CA C:TRP207 4.4 24.2 1.0
O C:TRP207 4.6 23.3 1.0
CA C:CYS210 4.7 26.1 1.0
NZ C:LYS206 4.7 45.1 1.0
CG C:TRP207 4.9 21.5 1.0
NE1 C:TRP207 4.9 21.5 1.0
CB C:ILE180 5.0 17.6 1.0

Reference:

J.P.Noel, H.E.Hamm, P.B.Sigler. The 2.2 A Crystal Structure of Transducin-Alpha Complexed with Gtp Gamma S. Nature V. 366 654 1993.
ISSN: ISSN 0028-0836
PubMed: 8259210
DOI: 10.1038/366654A0
Page generated: Tue Oct 27 16:47:28 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy