Arsenic in PDB 1vhd: Crystal Structure of An Iron Containing Alcohol Dehydrogenase

The structure of Crystal Structure of An Iron Containing Alcohol Dehydrogenase, PDB code: 1vhd was solved by Structural Genomix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	11.99 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	57.903, 85.067, 72.354, 90.00, 96.57, 90.00
R / Rfree (%)	19 / 20.8

The structure of Crystal Structure of An Iron Containing Alcohol Dehydrogenase also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Arsenic atom in the Crystal Structure of An Iron Containing Alcohol Dehydrogenase (pdb code 1vhd). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of An Iron Containing Alcohol Dehydrogenase, PDB code: 1vhd:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Crystal Structure of An Iron Containing Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of An Iron Containing Alcohol Dehydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ A:As370 b:27.1 occ:1.00 AS A:CAC370 0.0 27.1 1.0 O1 A:CAC370 1.8 28.1 1.0 C2 A:CAC370 1.8 26.6 1.0 C1 A:CAC370 1.8 28.2 1.0 SG A:CYS160 2.2 20.0 1.0 CB A:CYS160 3.0 17.7 1.0 CZ A:TYR120 3.5 25.4 1.0 CE1 A:TYR120 3.7 25.1 1.0 CE2 A:TYR120 3.9 24.3 1.0 OH A:TYR120 3.9 26.6 1.0 CB A:LEU119 3.9 18.0 1.0 CD1 A:TYR120 4.1 24.1 1.0 N A:CYS160 4.2 14.5 1.0 CA A:CYS160 4.2 14.4 1.0 O A:SER148 4.2 15.2 1.0 CD2 A:TYR120 4.3 24.2 1.0 CD1 A:LEU150 4.3 20.3 1.0 CG A:TYR120 4.4 23.8 1.0 CD1 A:LEU119 4.5 20.2 1.0 C A:LEU119 4.6 19.6 1.0 CG A:LEU150 4.7 17.8 1.0 C A:GLY159 4.8 17.0 1.0 O A:LEU119 4.8 18.2 1.0 N A:TYR120 4.8 20.6 1.0 CB A:SER148 4.8 9.4 1.0 O A:VAL116 4.8 19.9 1.0 CG A:LEU119 4.9 19.8 1.0 CA A:LEU119 4.9 18.7 1.0 O A:ARG158 5.0 19.9 1.0 OG A:SER148 5.0 10.9 1.0

Arsenic binding site 2 out of 2 in the Crystal Structure of An Iron Containing Alcohol Dehydrogenase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of An Iron Containing Alcohol Dehydrogenase within 5.0Å range: probe atom residue distance (Å) B Occ B:As370 b:30.3 occ:1.00 AS B:CAC370 0.0 30.3 1.0 O1 B:CAC370 1.7 29.8 1.0 C2 B:CAC370 1.8 30.5 1.0 C1 B:CAC370 1.8 31.8 1.0 SG B:CYS160 2.2 24.9 1.0 CB B:CYS160 3.0 23.3 1.0 CZ B:TYR120 3.5 31.9 1.0 CE1 B:TYR120 3.5 31.3 1.0 OH B:TYR120 3.8 32.1 1.0 CE2 B:TYR120 4.0 30.8 1.0 CB B:LEU119 4.0 25.0 1.0 CD1 B:TYR120 4.0 31.1 1.0 O B:SER148 4.2 20.7 1.0 N B:CYS160 4.2 22.4 1.0 CA B:CYS160 4.2 21.4 1.0 CD1 B:LEU150 4.3 26.6 1.0 CD2 B:TYR120 4.4 30.4 1.0 CG B:TYR120 4.4 30.0 1.0 CD1 B:LEU119 4.5 25.6 1.0 C B:LEU119 4.7 26.4 1.0 O B:LEU119 4.7 26.2 1.0 CG B:LEU150 4.7 25.5 1.0 O B:ARG158 4.8 25.7 1.0 C B:GLY159 4.8 24.4 1.0 CB B:SER148 4.8 18.3 1.0 O B:VAL116 4.9 26.1 1.0 N B:TYR120 4.9 27.0 1.0 OG B:SER148 4.9 18.2 1.0 CG B:LEU119 4.9 25.5 1.0 C B:SER148 5.0 19.5 1.0 CA B:LEU119 5.0 25.8 1.0

J.Badger, J.M.Sauder, J.M.Adams, S.Antonysamy, K.Bain, M.G.Bergseid, S.G.Buchanan, M.D.Buchanan, Y.Batiyenko, J.A.Christopher, S.Emtage, A.Eroshkina, I.Feil, E.B.Furlong, K.S.Gajiwala, X.Gao, D.He, J.Hendle, A.Huber, K.Hoda, P.Kearins, C.Kissinger, B.Laubert, H.A.Lewis, J.Lin, K.Loomis, D.Lorimer, G.Louie, M.Maletic, C.D.Marsh, I.Miller, J.Molinari, H.J.Muller-Dieckmann, J.M.Newman, B.W.Noland, B.Pagarigan, F.Park, T.S.Peat, K.W.Post, S.Radojicic, A.Ramos, R.Romero, M.E.Rutter, W.E.Sanderson, K.D.Schwinn, J.Tresser, J.Winhoven, T.A.Wright, L.Wu, J.Xu, T.J.Harris. Structural Analysis of A Set of Proteins Resulting From A Bacterial Genomics Project Proteins V. 60 787 2005.
ISSN: ISSN 0887-3585
PubMed: 16021622
DOI: 10.1002/PROT.20541