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Arsenic in PDB 1vho: Crystal Structure of A Putative Peptidase/Endoglucanase

Protein crystallography data

The structure of Crystal Structure of A Putative Peptidase/Endoglucanase, PDB code: 1vho was solved by Structural Genomix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.59 / 1.86
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 120.453, 120.453, 57.627, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 24.5

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Putative Peptidase/Endoglucanase (pdb code 1vho). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of A Putative Peptidase/Endoglucanase, PDB code: 1vho:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 1vho

Go back to Arsenic Binding Sites List in 1vho
Arsenic binding site 1 out of 2 in the Crystal Structure of A Putative Peptidase/Endoglucanase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Putative Peptidase/Endoglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As350

b:53.3
occ:1.00
AS A:CAC350 0.0 53.3 1.0
O1 A:CAC350 1.9 53.0 1.0
C1 A:CAC350 1.9 52.8 1.0
C2 A:CAC350 2.0 51.2 1.0
SG A:CYS141 2.1 38.3 1.0
CB A:CYS141 3.1 42.2 1.0
CA A:CYS141 3.6 38.1 1.0
N A:CYS141 3.9 33.5 1.0
O A:ARG109 4.0 20.2 1.0
CB A:GLU108 4.4 21.9 1.0
C A:LEU140 4.4 31.4 1.0
C A:ARG109 4.5 20.3 1.0
CA A:GLY110 4.6 18.1 1.0
O A:ASP137 4.6 18.2 1.0
O A:LEU140 4.7 32.2 1.0
OE1 A:GLU108 4.7 34.1 1.0
N A:GLY110 4.8 19.3 1.0
CG2 A:VAL136 4.9 19.2 1.0
CG2 A:VAL145 4.9 37.6 1.0
O A:HOH384 4.9 20.4 1.0
N A:ARG109 5.0 18.0 1.0
O A:HOH390 5.0 32.3 1.0

Arsenic binding site 2 out of 2 in 1vho

Go back to Arsenic Binding Sites List in 1vho
Arsenic binding site 2 out of 2 in the Crystal Structure of A Putative Peptidase/Endoglucanase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of A Putative Peptidase/Endoglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As351

b:31.6
occ:1.00
AS A:CAC351 0.0 31.6 1.0
O1 A:CAC351 1.8 34.9 1.0
C2 A:CAC351 1.9 36.0 1.0
C1 A:CAC351 2.0 33.5 1.0
SG A:CYS206 2.3 28.1 1.0
CB A:CYS206 3.1 30.0 1.0
CA A:CYS206 3.4 28.9 1.0
CB A:PHE63 3.8 19.4 1.0
N A:CYS206 4.0 30.5 1.0
CB A:SER199 4.0 23.7 1.0
CD2 A:PHE63 4.1 18.2 1.0
CG A:PHE63 4.3 19.1 1.0
OG A:SER199 4.3 30.6 1.0
CE1 A:HIS65 4.6 26.8 1.0
C A:CYS206 4.7 29.0 1.0
CB A:ASP285 4.7 50.0 1.0
C A:GLY205 4.7 29.9 1.0
N A:ALA64 4.7 14.3 1.0
CG A:ASP285 4.7 47.6 1.0
O A:ALA64 4.8 17.6 1.0
OD1 A:ASP285 4.9 43.6 1.0
NE2 A:HIS65 4.9 31.2 1.0
ND1 A:HIS65 4.9 26.5 1.0
CA A:PHE63 4.9 15.4 1.0
O A:HOH427 4.9 30.1 1.0
C A:PHE63 4.9 14.4 1.0
C A:ALA64 4.9 17.9 1.0
O A:CYS206 5.0 27.6 1.0

Reference:

J.Badger, J.M.Sauder, J.M.Adams, S.Antonysamy, K.Bain, M.G.Bergseid, S.G.Buchanan, M.D.Buchanan, Y.Batiyenko, J.A.Christopher, S.Emtage, A.Eroshkina, I.Feil, E.B.Furlong, K.S.Gajiwala, X.Gao, D.He, J.Hendle, A.Huber, K.Hoda, P.Kearins, C.Kissinger, B.Laubert, H.A.Lewis, J.Lin, K.Loomis, D.Lorimer, G.Louie, M.Maletic, C.D.Marsh, I.Miller, J.Molinari, H.J.Muller-Dieckmann, J.M.Newman, B.W.Noland, B.Pagarigan, F.Park, T.S.Peat, K.W.Post, S.Radojicic, A.Ramos, R.Romero, M.E.Rutter, W.E.Sanderson, K.D.Schwinn, J.Tresser, J.Winhoven, T.A.Wright, L.Wu, J.Xu, T.J.Harris. Structural Analysis of A Set of Proteins Resulting From A Bacterial Genomics Project Proteins V. 60 787 2005.
ISSN: ISSN 0887-3585
PubMed: 16021622
DOI: 10.1002/PROT.20541
Page generated: Tue Oct 27 16:47:33 2020

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