Atomistry » Arsenic » PDB 1q2o-1yhc » 1x1t
Atomistry »
  Arsenic »
    PDB 1q2o-1yhc »
      1x1t »

Arsenic in PDB 1x1t: Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+

Enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+

All present enzymatic activity of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+:
1.1.1.30;

Protein crystallography data

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+, PDB code: 1x1t was solved by K.Ito, Y.Nakajima, E.Ichihara, K.Ogawa, T.Yoshimoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.52
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 64.765, 99.970, 109.585, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 21.3

Other elements in 1x1t:

The structure of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+ also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+ (pdb code 1x1t). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+, PDB code: 1x1t:

Arsenic binding site 1 out of 1 in 1x1t

Go back to Arsenic Binding Sites List in 1x1t
Arsenic binding site 1 out of 1 in the Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi Complexed with Nad+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As302

b:18.8
occ:1.00
AS A:CAC302 0.0 18.8 1.0
O2 A:CAC302 1.6 18.3 1.0
O1 A:CAC302 1.7 16.3 1.0
C2 A:CAC302 1.8 19.9 1.0
C1 A:CAC302 2.0 15.6 1.0
OH A:TYR155 3.7 11.2 1.0
ND1 A:HIS144 3.7 11.1 1.0
OG A:SER142 3.8 9.8 1.0
CE1 A:TYR155 3.9 9.6 1.0
O A:HOH596 3.9 24.1 1.0
CZ A:TYR155 4.1 9.3 1.0
C5N A:NAD300 4.1 18.4 1.0
C4N A:NAD300 4.2 18.8 1.0
CE1 A:HIS144 4.2 10.4 1.0
CZ3 A:TRP187 4.2 19.3 1.0
NZ A:LYS152 4.3 20.7 1.0
C3N A:NAD300 4.5 18.2 1.0
O7N A:NAD300 4.6 18.0 1.0
CE3 A:TRP187 4.6 17.7 1.0
CH2 A:TRP187 4.7 18.1 1.0
CB A:SER142 4.8 9.3 1.0
C6N A:NAD300 4.8 16.1 1.0
CG A:HIS144 4.9 8.3 1.0
C7N A:NAD300 4.9 18.4 1.0
CD1 A:TYR155 4.9 10.8 1.0
C2N A:NAD300 4.9 17.1 1.0

Reference:

K.Ito, Y.Nakajima, E.Ichihara, K.Ogawa, N.Katayama, K.Nakashima, T.Yoshimoto. D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme J.Mol.Biol. V. 355 722 2006.
ISSN: ISSN 0022-2836
PubMed: 16325199
DOI: 10.1016/J.JMB.2005.10.072
Page generated: Tue Oct 27 16:47:40 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy