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Arsenic in PDB 2boq: Crystal Structure of Versatile Peroxidase

Protein crystallography data

The structure of Crystal Structure of Versatile Peroxidase, PDB code: 2boq was solved by T.Choinowski, K.Piontek, A.T.Martinez, M.Perez-Boada, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.25 / 1.33
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 62.799, 62.799, 98.222, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 18.2

Other elements in 2boq:

The structure of Crystal Structure of Versatile Peroxidase also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Iron (Fe) 1 atom
Calcium (Ca) 2 atoms
Zinc (Zn) 8 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of Versatile Peroxidase (pdb code 2boq). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of Versatile Peroxidase, PDB code: 2boq:

Arsenic binding site 1 out of 1 in 2boq

Go back to Arsenic Binding Sites List in 2boq
Arsenic binding site 1 out of 1 in the Crystal Structure of Versatile Peroxidase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Versatile Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As1329

b:13.1
occ:1.00
AS A:CAC1329 0.0 13.1 1.0
O1 A:CAC1329 1.7 24.7 1.0
O2 A:CAC1329 1.8 24.1 1.0
C1 A:CAC1329 2.0 25.2 1.0
C2 A:CAC1329 2.0 22.8 1.0
ZN A:ZN1325 3.2 32.0 1.0
ZN A:ZN1327 3.2 24.6 1.0
O A:HIS136 3.6 16.2 1.0
OE1 A:GLU140 3.9 23.7 1.0
OD2 A:ASP143 4.0 15.2 1.0
O A:HOH2195 4.1 22.3 1.0
C A:HIS136 4.2 14.6 1.0
CA A:HIS136 4.4 16.4 1.0
O A:HOH2203 4.4 18.5 1.0
CB A:HIS136 4.4 19.1 1.0
OD1 A:ASP143 4.7 15.8 1.0
CG A:ASP143 4.7 14.8 1.0
O A:VAL138 4.7 12.8 1.0
ZN A:ZN1326 4.8 40.4 1.0
CD A:GLU140 4.8 23.0 1.0
ND1 A:HIS136 4.8 27.3 1.0
O A:HOH2192 4.8 37.7 1.0
OG A:SER147 4.8 17.5 1.0

Reference:

M.Perez-Boada, F.J.Ruiz-Duenas, R.Pogni, R.Basosi, T.Choinowski, M.J.Martinez, K.Piontek, A.T.Martinez. Versatile Peroxidase Oxidation of High Redox Potential Aromatic Compounds: Site-Directed Mutagenesis, Spectroscopic and Crystallographic Investigation of Three Long-Range Electron Transfer Pathways. J.Mol.Biol. V. 354 385 2005.
ISSN: ISSN 0022-2836
PubMed: 16246366
DOI: 10.1016/J.JMB.2005.09.047
Page generated: Tue Oct 27 16:48:40 2020

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