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Arsenic in PDB 2bvt: The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases.

Enzymatic activity of The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases.

All present enzymatic activity of The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases.:
3.2.1.78;

Protein crystallography data

The structure of The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases., PDB code: 2bvt was solved by J.Le Nours, L.Anderson, D.Stoll, H.Stalbrand, L.Lo Leggio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.39 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 73.122, 98.795, 133.133, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 25

Arsenic Binding Sites:

The binding sites of Arsenic atom in the The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases. (pdb code 2bvt). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases., PDB code: 2bvt:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 2bvt

Go back to Arsenic Binding Sites List in 2bvt
Arsenic binding site 1 out of 2 in the The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As600

b:64.6
occ:1.00
 AS A:CAC600 0.0 64.6 1.0
O2 A:CAC600 1.6 63.7 1.0
O1 A:CAC600 1.7 64.7 1.0
C2 A:CAC600 1.9 64.5 1.0
C1 A:CAC600 1.9 63.7 1.0
OE1 A:GLU282 3.4 18.0 1.0
NE2 A:HIS113 3.7 19.3 1.0
O1 A:BMA500 3.7 33.4 1.0
OE2 A:GLU175 3.9 15.9 1.0
OE2 A:GLU282 4.0 17.6 1.0
CD A:GLU282 4.1 18.1 1.0
CE1 A:HIS113 4.2 18.1 1.0
NE2 A:HIS174 4.2 4.6 1.0
C1 A:BMA500 4.4 29.9 1.0
O5 A:BMA500 4.4 30.1 1.0
CZ2 A:TRP322 4.5 10.9 1.0
CZ A:PHE181 4.5 13.2 1.0
OE1 A:GLU175 4.5 16.5 1.0
CE2 A:TRP322 4.5 11.1 1.0
CD A:GLU175 4.6 15.8 1.0
CD2 A:HIS174 4.7 3.7 1.0
CH2 A:TRP322 4.8 10.0 1.0
CD2 A:HIS113 4.9 18.4 1.0
NE1 A:TRP322 4.9 10.3 1.0
CD2 A:TRP322 4.9 10.8 1.0
OH A:TYR248 5.0 23.8 1.0

Arsenic binding site 2 out of 2 in 2bvt

Go back to Arsenic Binding Sites List in 2bvt
Arsenic binding site 2 out of 2 in the The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of The Structure of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Explains the Product Specificity of Glycoside Hydrolase Family 26 Mannanases. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As600

b:64.6
occ:1.00
 AS B:CAC600 0.0 64.6 1.0
O2 B:CAC600 1.6 63.7 1.0
O1 B:CAC600 1.7 64.7 1.0
C2 B:CAC600 1.9 64.5 1.0
C1 B:CAC600 1.9 63.7 1.0
OE1 B:GLU282 3.4 18.0 1.0
NE2 B:HIS113 3.7 19.3 1.0
O1 B:BMA500 3.7 33.4 1.0
OE2 B:GLU175 3.9 15.9 1.0
OE2 B:GLU282 4.0 17.6 1.0
CD B:GLU282 4.1 18.1 1.0
CE1 B:HIS113 4.2 18.1 1.0
NE2 B:HIS174 4.2 4.6 1.0
C1 B:BMA500 4.4 29.9 1.0
O5 B:BMA500 4.4 30.1 1.0
CZ2 B:TRP322 4.5 10.9 1.0
CZ B:PHE181 4.5 13.2 1.0
OE1 B:GLU175 4.5 16.5 1.0
CE2 B:TRP322 4.5 11.1 1.0
CD B:GLU175 4.6 15.8 1.0
CD2 B:HIS174 4.7 3.7 1.0
CH2 B:TRP322 4.8 10.0 1.0
CD2 B:HIS113 4.9 18.4 1.0
NE1 B:TRP322 4.9 10.3 1.0
CD2 B:TRP322 4.9 10.8 1.0
OH B:TYR248 5.0 23.8 1.0

Reference:

J.Le Nours, L.Anderson, D.Stoll, H.Stalbrand, L.Lo Leggio. The Structure and Characterization of A Modular Endo-Beta-1,4-Mannanase From Cellulomonas Fimi Biochemistry V. 44 12700 2005.
ISSN: ISSN 0006-2960
PubMed: 16171384
DOI: 10.1021/BI050779V
Page generated: Wed Jul 10 11:19:53 2024

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