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Arsenic in PDB 2dyb: The Crystal Structure of Human P40(Phox)

Protein crystallography data

The structure of The Crystal Structure of Human P40(Phox), PDB code: 2dyb was solved by K.Honbou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.80 / 3.15
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 146.273, 189.813, 79.883, 90.00, 90.00, 90.00
R / Rfree (%) 26.3 / 30.2

Arsenic Binding Sites:

The binding sites of Arsenic atom in the The Crystal Structure of Human P40(Phox) (pdb code 2dyb). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the The Crystal Structure of Human P40(Phox), PDB code: 2dyb:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 2dyb

Go back to Arsenic Binding Sites List in 2dyb
Arsenic binding site 1 out of 2 in the The Crystal Structure of Human P40(Phox)


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The Crystal Structure of Human P40(Phox) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As84

b:0.9
occ:0.50
AS A:CAF84 0.0 0.9 0.5
O1 A:CAF84 1.6 0.5 0.5
CE1 A:CAF84 1.9 0.5 0.5
CE2 A:CAF84 2.0 0.9 0.5
SG A:CAF84 2.3 0.8 0.5
CB A:CAF84 3.4 0.3 0.5
N A:THR85 4.0 0.8 1.0
C A:CAF84 4.0 0.4 0.5
CG A:LEU86 4.1 0.8 1.0
N A:LEU86 4.1 0.2 1.0
CD1 A:LEU119 4.1 85.5 1.0
O A:CAF84 4.3 0.6 0.5
CA A:CAF84 4.3 0.8 0.5
C A:THR85 4.3 0.8 1.0
CA A:THR85 4.4 0.7 1.0
CD2 A:LEU86 4.4 0.0 1.0
CH2 A:TRP122 4.7 96.9 1.0
CA A:LEU86 4.7 1.0 1.0
CB A:LEU86 4.8 0.3 1.0
CZ2 A:TRP122 4.9 95.7 1.0

Arsenic binding site 2 out of 2 in 2dyb

Go back to Arsenic Binding Sites List in 2dyb
Arsenic binding site 2 out of 2 in the The Crystal Structure of Human P40(Phox)


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of The Crystal Structure of Human P40(Phox) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As84

b:85.6
occ:1.00
AS B:CAF84 0.0 85.6 1.0
O1 B:CAF84 1.6 86.6 1.0
CE1 B:CAF84 1.9 88.1 1.0
CE2 B:CAF84 2.0 89.4 1.0
SG B:CAF84 2.2 87.0 1.0
CB B:CAF84 3.3 82.5 1.0
N B:THR85 4.0 81.6 1.0
C B:CAF84 4.0 82.9 1.0
N B:LEU86 4.2 79.0 1.0
CG B:LEU86 4.3 74.8 1.0
CA B:CAF84 4.3 82.8 1.0
C B:THR85 4.4 80.2 1.0
CA B:THR85 4.4 80.8 1.0
O B:CAF84 4.5 84.9 1.0
CD2 B:LEU86 4.5 74.8 1.0
CA B:LEU86 4.8 77.4 1.0
CD2 B:PHE73 4.8 68.1 1.0
CD1 B:LEU119 4.8 56.1 1.0
CG B:PHE73 4.9 68.4 1.0
CB B:SER79 4.9 79.1 1.0
CB B:LEU86 5.0 76.0 1.0

Reference:

K.Honbou, R.Minakami, S.Yuzawa, R.Takeya, N.N.Suzuki, S.Kamakura, H.Sumimoto, F.Inagaki. Full-Length P40PHOX Structure Suggests A Basis For Regulation Mechanism of Its Membrane Binding. Embo J. V. 26 1176 2007.
ISSN: ISSN 0261-4189
PubMed: 17290225
DOI: 10.1038/SJ.EMBOJ.7601561
Page generated: Tue Oct 27 16:48:44 2020

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