Arsenic in PDB 2gbm: Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin

The structure of Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin, PDB code: 2gbm was solved by D.M.Ferraro, D.J.Ferraro, S.Ramaswamy, A.D.Robertson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.51 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	48.817, 49.786, 123.147, 90.00, 90.00, 90.00
R / Rfree (%)	21.3 / 22.7

The binding sites of Arsenic atom in the Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin (pdb code 2gbm). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin, PDB code: 2gbm:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ B:As503 b:17.7 occ:1.00 OD2 B:ASP60 2.0 16.2 1.0 O B:HOH590 2.0 5.6 1.0 O B:HOH589 2.1 6.0 1.0 OD2 C:ASP47 2.1 10.3 1.0 OE1 B:GLU24 2.1 14.9 1.0 OD1 C:ASP47 2.4 15.2 1.0 CG C:ASP47 2.6 13.9 1.0 CG B:ASP60 3.0 16.0 1.0 CD B:GLU24 3.0 18.5 1.0 OE2 B:GLU24 3.3 21.2 1.0 CB B:ASP60 3.3 15.3 1.0 OD1 B:ASP47 3.8 14.7 1.0 NZ B:LYS27 3.9 18.1 1.0 O C:HOH521 4.0 11.2 1.0 CB C:ASP47 4.1 15.7 1.0 O B:HOH506 4.1 6.4 1.0 OD1 B:ASP60 4.1 16.8 1.0 O B:HOH512 4.2 8.2 1.0 CG B:GLU24 4.4 16.8 1.0 O C:HOH588 4.6 6.2 1.0 CD B:LYS27 4.7 20.9 1.0 CA B:ASP60 4.8 16.0 1.0 O B:HOH505 4.8 6.3 1.0 CE B:LYS27 4.8 23.0 1.0 CG B:ASP47 4.9 15.1 1.0 CA B:ASP47 4.9 17.3 1.0 CB B:GLU24 4.9 16.2 1.0 CA C:ASP47 5.0 16.9 1.0

Arsenic binding site 2 out of 3 in the Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ C:As501 b:19.4 occ:1.00 OD2 C:ASP60 2.0 18.5 1.0 O C:HOH588 2.0 6.2 1.0 OE1 C:GLU24 2.1 15.6 1.0 OD2 B:ASP47 2.1 12.2 1.0 O C:HOH589 2.2 6.4 1.0 OD1 B:ASP47 2.4 14.7 1.0 CG B:ASP47 2.6 15.1 1.0 CD C:GLU24 3.0 17.5 1.0 CG C:ASP60 3.0 17.9 1.0 OE2 C:GLU24 3.2 20.0 1.0 CB C:ASP60 3.3 15.4 1.0 OD1 C:ASP47 3.8 15.2 1.0 NZ C:LYS27 4.0 23.2 1.0 O C:HOH503 4.0 6.4 1.0 CB B:ASP47 4.1 16.6 1.0 OD1 C:ASP60 4.1 18.9 1.0 O C:HOH510 4.2 8.4 1.0 O B:HOH530 4.3 12.8 1.0 CG C:GLU24 4.4 16.2 1.0 O B:HOH590 4.6 5.6 1.0 CD C:LYS27 4.8 22.4 1.0 CE C:LYS27 4.8 26.3 1.0 CB C:GLU24 4.8 17.1 1.0 CG C:ASP47 4.8 13.9 1.0 CA C:ASP60 4.8 16.1 1.0 CA C:ASP47 4.9 16.9 1.0 O C:HOH505 5.0 6.1 1.0 CA B:ASP47 5.0 17.3 1.0

Arsenic binding site 3 out of 3 in the Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ D:As502 b:21.9 occ:1.00 OD2 D:ASP60 2.0 21.5 1.0 OE1 D:GLU24 2.1 21.1 1.0 O D:HOH591 2.2 4.0 1.0 O D:HOH592 2.3 3.2 1.0 CD D:GLU24 2.9 20.5 1.0 CG D:ASP60 3.0 18.8 1.0 OE2 D:GLU24 3.2 24.9 1.0 CB D:ASP60 3.3 19.6 1.0 NZ D:LYS27 3.9 22.4 1.0 OD1 D:ASP60 4.1 22.6 1.0 CG D:GLU24 4.3 18.2 1.0 CD D:LYS27 4.5 21.5 1.0 CE D:LYS27 4.7 23.5 1.0 CB D:GLU24 4.7 17.3 1.0 CA D:ASP60 4.8 18.6 1.0 O D:HOH537 4.9 12.1 1.0

D.M.Ferraro, D.J.Ferraro, S.Ramaswamy, A.D.Robertson. Structures of Ubiquitin Insertion Mutants Support Site-Specific Reflex Response to Insertions Hypothesis. J.Mol.Biol. V. 359 390 2006.
ISSN: ISSN 0022-2836
PubMed: 16647719
DOI: 10.1016/J.JMB.2006.03.047