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Arsenic in PDB 2hyp: Crystal Structure of RV0805 D66A Mutant

Enzymatic activity of Crystal Structure of RV0805 D66A Mutant

All present enzymatic activity of Crystal Structure of RV0805 D66A Mutant:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of RV0805 D66A Mutant, PDB code: 2hyp was solved by A.R.Shenoy, M.Capuder, P.Draskovic, D.Lamba, S.S.Visweswariah, M.Podobnik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.05
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 55.297, 93.709, 50.924, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 25.7

Other elements in 2hyp:

The structure of Crystal Structure of RV0805 D66A Mutant also contains other interesting chemical elements:

Bromine (Br) 4 atoms
Manganese (Mn) 1 atom
Iron (Fe) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of RV0805 D66A Mutant (pdb code 2hyp). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of RV0805 D66A Mutant, PDB code: 2hyp:

Arsenic binding site 1 out of 1 in 2hyp

Go back to Arsenic Binding Sites List in 2hyp
Arsenic binding site 1 out of 1 in the Crystal Structure of RV0805 D66A Mutant


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of RV0805 D66A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As400

b:59.4
occ:0.75
AS A:CAC400 0.0 59.4 0.8
O2 A:CAC400 1.7 58.5 0.8
O1 A:CAC400 1.7 59.3 0.8
C1 A:CAC400 2.0 58.8 0.8
C2 A:CAC400 2.0 59.4 0.8
O A:HOH608 3.0 55.7 1.0
NE2 A:HIS98 3.4 57.3 1.0
FE A:FE444 3.5 39.5 0.5
MN A:MN555 3.6 40.7 1.0
CD2 A:HIS98 3.8 57.5 1.0
OD2 A:ASP63 3.8 58.0 1.0
ND2 A:ASN97 4.1 52.9 1.0
NE2 A:HIS209 4.3 63.8 1.0
CE1 A:HIS207 4.4 56.9 1.0
ND1 A:HIS207 4.4 57.8 1.0
O A:HIS207 4.5 59.0 1.0
OD1 A:ASN97 4.6 52.9 1.0
CE1 A:HIS98 4.6 58.5 1.0
CE1 A:HIS23 4.7 58.5 1.0
CG A:ASN97 4.8 54.0 1.0
CD2 A:HIS209 4.8 63.3 1.0
NE2 A:HIS23 4.9 58.0 1.0
CG A:ASP63 5.0 57.1 1.0
CE1 A:HIS209 5.0 63.7 1.0

Reference:

A.R.Shenoy, M.Capuder, P.Draskovic, D.Lamba, S.S.Visweswariah, M.Podobnik. Structural and Biochemical Analysis of the RV0805 Cyclic Nucleotide Phosphodiesterase From Mycobacterium Tuberculosis. J.Mol.Biol. V. 365 211 2007.
ISSN: ISSN 0022-2836
PubMed: 17059828
DOI: 10.1016/J.JMB.2006.10.005
Page generated: Sat Dec 12 01:38:07 2020

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