Atomistry » Arsenic » PDB 2im3-2xnq » 2w9j
Atomistry »
  Arsenic »
    PDB 2im3-2xnq »
      2w9j »

Arsenic in PDB 2w9j: The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle

Protein crystallography data

The structure of The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle, PDB code: 2w9j was solved by M.A.Brooks, R.B.G.Ravelli, A.A.Mccarthy, K.Strub, S.Cusack, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.62 / 2.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 57.040, 57.040, 86.370, 90.00, 90.00, 120.00
R / Rfree (%) 23.8 / 28.1

Arsenic Binding Sites:

The binding sites of Arsenic atom in the The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle (pdb code 2w9j). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 4 binding sites of Arsenic where determined in the The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle, PDB code: 2w9j:
Jump to Arsenic binding site number: 1; 2; 3; 4;

Arsenic binding site 1 out of 4 in 2w9j

Go back to Arsenic Binding Sites List in 2w9j
Arsenic binding site 1 out of 4 in the The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As33

b:69.7
occ:1.00
AS A:CAS33 0.0 69.7 1.0
CE1 A:CAS33 2.0 65.4 1.0
CE2 A:CAS33 2.0 64.9 1.0
SG A:CAS33 2.2 58.2 1.0
CB A:CAS33 3.2 51.6 1.0
NE2 A:GLN31 3.4 50.8 1.0
CD A:GLN31 4.2 48.7 1.0
CG A:GLN31 4.3 45.5 1.0
CA A:CAS33 4.4 50.6 1.0
N A:CAS33 4.6 48.6 1.0
C A:LYS32 5.0 47.1 1.0

Arsenic binding site 2 out of 4 in 2w9j

Go back to Arsenic Binding Sites List in 2w9j
Arsenic binding site 2 out of 4 in the The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As78

b:79.8
occ:1.00
AS A:CAS78 0.0 79.8 1.0
CE1 A:CAS78 2.0 78.0 1.0
CE2 A:CAS78 2.0 77.9 1.0
SG A:CAS78 2.2 71.7 1.0
CB A:CAS78 3.2 66.3 1.0
CA A:CAS78 3.7 65.3 1.0
C A:CAS78 4.3 64.8 1.0
O A:CAS78 4.3 64.8 1.0
CD1 A:ILE82 4.5 61.7 1.0
CD2 A:LEU29 4.6 36.4 1.0

Arsenic binding site 3 out of 4 in 2w9j

Go back to Arsenic Binding Sites List in 2w9j
Arsenic binding site 3 out of 4 in the The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As33

b:67.1
occ:1.00
AS B:CAS33 0.0 67.1 1.0
CE2 B:CAS33 2.0 64.5 1.0
CE1 B:CAS33 2.0 63.7 1.0
SG B:CAS33 2.3 57.5 1.0
CB B:CAS33 3.4 53.5 1.0
N B:CAS33 3.9 51.5 1.0
CA B:CAS33 4.1 53.1 1.0
C B:LYS32 4.7 50.6 1.0
O B:GLN31 4.7 47.9 1.0

Arsenic binding site 4 out of 4 in 2w9j

Go back to Arsenic Binding Sites List in 2w9j
Arsenic binding site 4 out of 4 in the The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 4 of The Crystal Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As78

b:69.6
occ:1.00
AS B:CAS78 0.0 69.6 1.0
CE1 B:CAS78 2.0 67.9 1.0
CE2 B:CAS78 2.0 67.8 1.0
SG B:CAS78 2.2 59.7 1.0
CB B:CAS78 3.2 54.4 1.0
CA B:CAS78 4.2 53.1 1.0
CD2 B:LEU16 4.4 44.2 1.0
CD1 B:LEU16 4.5 43.8 1.0
OH B:TYR74 4.5 43.1 1.0
CE2 B:TYR74 4.7 40.1 1.0
CZ B:TYR74 4.8 40.9 1.0

Reference:

M.A.Brooks, R.B.G.Ravelli, A.A.Mccarthy, K.Strub, S.Cusack. Structure of SRP14 From the Schizosaccharomyces Pombe Signal Recognition Particle. Acta Crystallogr.,Sect.D V. 65 421 2009.
ISSN: ISSN 0907-4449
PubMed: 19390147
DOI: 10.1107/S0907444909005484
Page generated: Wed Jul 10 11:32:11 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy