Atomistry » Arsenic » PDB 2xod-3g2f » 3bfd
Atomistry »
  Arsenic »
    PDB 2xod-3g2f »
      3bfd »

Arsenic in PDB 3bfd: Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii

Enzymatic activity of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii

All present enzymatic activity of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii, PDB code: 3bfd was solved by L.Pernot, S.Petrella, W.Sougakoff, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.70 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 187.642, 73.200, 103.893, 90.00, 121.89, 90.00
R / Rfree (%) 18.3 / 21.4

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii (pdb code 3bfd). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 4 binding sites of Arsenic where determined in the Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii, PDB code: 3bfd:
Jump to Arsenic binding site number: 1; 2; 3; 4;

Arsenic binding site 1 out of 4 in 3bfd

Go back to Arsenic Binding Sites List in 3bfd
Arsenic binding site 1 out of 4 in the Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As1

b:32.1
occ:1.00
 AS A:CAC1 0.0 32.1 1.0
O1 A:CAC1 1.7 30.1 1.0
O2 A:CAC1 1.8 31.8 1.0
C2 A:CAC1 2.0 31.6 1.0
C1 A:CAC1 2.0 31.4 1.0
O A:HOH302 3.3 15.2 1.0
OG A:SER70 3.3 14.7 1.0
OG A:SER130 3.6 13.3 1.0
O A:HOH317 3.7 23.9 1.0
O A:HOH311 3.9 16.2 1.0
O A:HOH316 4.2 19.3 1.0
CB A:SER70 4.2 9.1 1.0
O A:ALA237 4.3 14.6 1.0
CB A:SER130 4.3 14.2 1.0
NZ A:LYS73 4.3 15.8 1.0
O A:HOH521 4.5 38.7 1.0
OD1 A:ASN132 4.5 16.9 1.0
O A:SER130 4.6 14.3 1.0
O A:HOH543 4.8 31.0 1.0
N A:ALA237 4.9 13.2 1.0
ND2 A:ASN132 5.0 17.2 1.0

Arsenic binding site 2 out of 4 in 3bfd

Go back to Arsenic Binding Sites List in 3bfd
Arsenic binding site 2 out of 4 in the Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As2

b:32.6
occ:1.00
 AS B:CAC2 0.0 32.6 1.0
O1 B:CAC2 1.7 31.4 1.0
O2 B:CAC2 1.8 30.5 1.0
C2 B:CAC2 2.0 30.7 1.0
C1 B:CAC2 2.0 31.4 1.0
O B:HOH300 3.2 15.4 1.0
OG B:SER70 3.3 12.7 1.0
O B:HOH401 3.4 28.6 1.0
OG B:SER130 3.6 12.9 1.0
O B:HOH317 3.9 15.2 1.0
O B:HOH302 4.2 20.4 1.0
CB B:SER70 4.2 11.3 1.0
O B:ALA237 4.3 12.4 1.0
CB B:SER130 4.3 13.7 1.0
O B:HOH541 4.5 44.6 1.0
NZ B:LYS73 4.6 14.2 1.0
O B:SER130 4.6 13.7 1.0
O B:HOH542 4.6 44.1 1.0
OD1 B:ASN132 4.6 13.4 1.0
O B:HOH402 4.8 34.4 1.0
N B:ALA237 4.9 11.1 1.0

Arsenic binding site 3 out of 4 in 3bfd

Go back to Arsenic Binding Sites List in 3bfd
Arsenic binding site 3 out of 4 in the Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As3

b:36.9
occ:1.00
 AS C:CAC3 0.0 36.9 1.0
O1 C:CAC3 1.7 31.0 1.0
O2 C:CAC3 1.8 32.0 1.0
C2 C:CAC3 2.0 36.3 1.0
C1 C:CAC3 2.0 32.7 1.0
O C:HOH449 3.2 11.7 1.0
O C:HOH497 3.3 21.6 1.0
OG C:SER70 3.4 13.1 1.0
OG C:SER130 3.5 13.0 1.0
O C:HOH458 3.9 15.4 1.0
O C:HOH467 4.2 25.3 1.0
CB C:SER130 4.2 11.6 1.0
O C:ALA237 4.3 15.3 1.0
CB C:SER70 4.3 11.9 1.0
O C:HOH602 4.4 39.5 1.0
NZ C:LYS73 4.5 11.2 1.0
O C:SER130 4.5 12.3 1.0
OD1 C:ASN132 4.7 13.8 1.0
N C:ALA237 4.9 12.8 1.0

Arsenic binding site 4 out of 4 in 3bfd

Go back to Arsenic Binding Sites List in 3bfd
Arsenic binding site 4 out of 4 in the Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 4 of Crystal Structure of the Class A Beta-Lactamase Sed-G238C Mutant From Citrobacter Sedlakii within 5.0Å range:
probe atom residue distance (Å) B Occ
D:As4

b:28.6
occ:1.00
 AS D:CAC4 0.0 28.6 1.0
O1 D:CAC4 1.7 25.2 1.0
O2 D:CAC4 1.8 26.0 1.0
C2 D:CAC4 2.0 29.9 1.0
C1 D:CAC4 2.0 28.9 1.0
O D:HOH475 3.3 18.5 1.0
OG D:SER70 3.3 14.3 1.0
O D:HOH483 3.6 17.1 1.0
OG D:SER130 3.6 16.5 1.0
O D:HOH515 3.9 19.9 1.0
CB D:SER70 4.3 12.0 1.0
O D:HOH473 4.3 17.9 1.0
O D:HOH560 4.3 38.1 1.0
O D:ALA237 4.3 12.4 1.0
NZ D:LYS73 4.4 12.5 1.0
CB D:SER130 4.4 15.2 1.0
OD1 D:ASN132 4.6 16.1 1.0
O D:SER130 4.7 15.4 1.0
O D:HOH570 4.7 37.7 1.0
N D:ALA237 4.8 10.6 1.0
ND2 D:ASN132 5.0 16.1 1.0

Reference:

L.Pernot, S.Petrella, W.Sougakoff. Acyl-Intermediate Structures of the Class A Beta-Lactamase Sed-G238C To Be Published.
Page generated: Sat Dec 12 01:39:33 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy