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Arsenic in PDB 3cfv: Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4

Protein crystallography data

The structure of Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4, PDB code: 3cfv was solved by X.-Y.Pei, N.V.Murzina, W.Zhang, S.Mclaughlin, A.Verreault, B.F.Luisi, E.D.Laue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 108.661, 44.790, 109.592, 90.00, 90.71, 90.00
R / Rfree (%) 19.9 / 25.7

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4 (pdb code 3cfv). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4, PDB code: 3cfv:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 3cfv

Go back to Arsenic Binding Sites List in 3cfv
Arsenic binding site 1 out of 2 in the Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As412

b:99.8
occ:1.00
SG B:CYS116 2.7 58.6 1.0
CG2 B:VAL79 3.9 27.7 1.0
O B:GLU115 4.1 35.5 1.0
CB B:CYS116 4.1 40.4 1.0
CB B:ALA81 4.1 26.1 1.0
CA B:CYS116 4.3 35.0 1.0
C B:GLU115 4.3 35.3 1.0
O B:HOH467 4.3 33.5 1.0
N B:CYS116 4.4 31.4 1.0
CD1 B:ILE114 4.6 45.5 1.0
CA B:ALA81 4.8 25.6 1.0
CG1 B:ILE114 4.8 43.6 1.0
CD2 B:LEU39 5.0 19.8 1.0

Arsenic binding site 2 out of 2 in 3cfv

Go back to Arsenic Binding Sites List in 3cfv
Arsenic binding site 2 out of 2 in the Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Structural Basis of the Interaction of RBAP46/RBAP48 with Histone H4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As412

b:80.5
occ:1.00
SG A:CYS116 2.8 67.8 1.0
CG1 A:VAL79 3.9 25.1 1.0
CB A:CYS116 4.1 45.6 1.0
CA A:CYS116 4.2 41.6 1.0
O A:GLU115 4.2 38.0 1.0
CB A:ALA81 4.4 23.8 1.0
N A:CYS116 4.4 37.8 1.0
C A:GLU115 4.4 36.2 1.0
CD1 A:ILE114 4.9 45.2 1.0
CG1 A:ILE114 5.0 43.0 1.0
CA A:ALA81 5.0 26.8 1.0

Reference:

N.V.Murzina, X.Y.Pei, W.Zhang, M.Sparkes, J.Vicente-Garcia, J.V.Pratap, S.H.Mclaughlin, T.R.Ben-Shahar, A.Verreault, B.F.Luisi, E.D.Laue. Structural Basis For the Recognition of Histone H4 By the Histone-Chaperone RBAP46. Structure V. 16 1077 2008.
ISSN: ISSN 0969-2126
PubMed: 18571423
DOI: 10.1016/J.STR.2008.05.006
Page generated: Tue Oct 27 16:49:58 2020

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