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Arsenic in PDB 3due: Crystal Structure of A Putative Periplasmic Protein From DUF2874 Family (BVU_2987) From Bacteroides Vulgatus Atcc 8482 at 1.85 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Periplasmic Protein From DUF2874 Family (BVU_2987) From Bacteroides Vulgatus Atcc 8482 at 1.85 A Resolution, PDB code: 3due was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.36 / 1.85
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 31.601, 50.874, 79.507, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.3

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Putative Periplasmic Protein From DUF2874 Family (BVU_2987) From Bacteroides Vulgatus Atcc 8482 at 1.85 A Resolution (pdb code 3due). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of A Putative Periplasmic Protein From DUF2874 Family (BVU_2987) From Bacteroides Vulgatus Atcc 8482 at 1.85 A Resolution, PDB code: 3due:

Arsenic binding site 1 out of 1 in 3due

Go back to Arsenic Binding Sites List in 3due
Arsenic binding site 1 out of 1 in the Crystal Structure of A Putative Periplasmic Protein From DUF2874 Family (BVU_2987) From Bacteroides Vulgatus Atcc 8482 at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Putative Periplasmic Protein From DUF2874 Family (BVU_2987) From Bacteroides Vulgatus Atcc 8482 at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As1

b:23.4
occ:1.00
AS A:CAC1 0.0 23.4 1.0
O1 A:CAC1 1.8 22.5 1.0
O2 A:CAC1 1.8 26.1 1.0
C2 A:CAC1 2.0 20.6 1.0
C1 A:CAC1 2.0 23.6 1.0
OH A:TYR87 3.8 24.0 1.0
NZ A:LYS86 3.9 22.9 1.0
O A:GLY69 3.9 23.3 1.0
CE2 A:TYR87 4.3 23.3 1.0
CZ A:TYR87 4.5 23.6 1.0
O A:HOH146 4.5 12.5 1.0
C A:GLY69 4.9 22.7 1.0

Reference:

D.Das, R.D.Finn, D.Carlton, M.D.Miller, P.Abdubek, T.Astakhova, H.L.Axelrod, C.Bakolitsa, C.Chen, H.J.Chiu, M.Chiu, T.Clayton, M.C.Deller, L.Duan, K.Ellrott, D.Ernst, C.L.Farr, J.Feuerhelm, J.C.Grant, A.Grzechnik, G.W.Han, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, P.Kozbial, S.S.Krishna, A.Kumar, D.Marciano, D.Mcmullan, A.T.Morse, E.Nigoghossian, A.Nopakun, L.Okach, C.Puckett, R.Reyes, C.L.Rife, N.Sefcovic, H.J.Tien, C.B.Trame, H.Van Den Bedem, D.Weekes, T.Wooten, Q.Xu, K.O.Hodgson, J.Wooley, M.A.Elsliger, A.M.Deacon, A.Godzik, S.A.Lesley, I.A.Wilson. The Structure of BVU2987 From Bacteroides Vulgatus Reveals A Superfamily of Bacterial Periplasmic Proteins with Possible Inhibitory Function. Acta Crystallogr.,Sect.F V. 66 1265 2010.
ISSN: ESSN 1744-3091
PubMed: 20944221
DOI: 10.1107/S1744309109046788
Page generated: Tue Oct 27 16:49:59 2020

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