Atomistry » Arsenic » PDB 2xod-3g2f » 3e38
Atomistry »
  Arsenic »
    PDB 2xod-3g2f »
      3e38 »

Arsenic in PDB 3e38: Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution, PDB code: 3e38 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 2.20
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 95.680, 117.820, 79.560, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 22.5

Other elements in 3e38:

The structure of Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution (pdb code 3e38). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution, PDB code: 3e38:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 3e38

Go back to Arsenic Binding Sites List in 3e38
Arsenic binding site 1 out of 2 in the Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As7

b:54.6
occ:1.00
AS A:CAC7 0.0 54.6 1.0
O2 A:CAC7 1.7 52.9 1.0
O1 A:CAC7 1.8 47.6 1.0
C2 A:CAC7 2.0 30.8 1.0
C1 A:CAC7 2.0 28.6 1.0
ZN A:ZN3 2.8 27.2 1.0
O A:HOH378 3.0 24.0 1.0
ZN A:ZN1 3.2 35.0 1.0
CE1 A:HIS76 3.5 31.9 1.0
ZN A:ZN2 3.5 30.5 1.0
NE2 A:HIS216 3.6 32.9 1.0
CE1 A:HIS216 3.7 32.7 1.0
NE2 A:HIS76 3.7 23.2 1.0
OD2 A:ASP214 4.1 32.5 1.0
OD1 A:ASP214 4.2 30.4 1.0
OE1 A:GLU113 4.5 34.1 1.0
OD2 A:ASP51 4.5 37.1 1.0
NE2 A:HIS157 4.6 27.0 1.0
CG A:ASP214 4.6 29.1 1.0
ND1 A:HIS122 4.6 27.4 1.0
CE1 A:HIS122 4.6 29.7 1.0
NE2 A:HIS46 4.6 22.9 1.0
OE2 A:GLU113 4.7 29.3 1.0
ND1 A:HIS76 4.7 24.8 1.0
CD2 A:HIS216 4.9 31.6 1.0
ND1 A:HIS216 4.9 27.0 1.0
CD A:GLU113 5.0 32.8 1.0

Arsenic binding site 2 out of 2 in 3e38

Go back to Arsenic Binding Sites List in 3e38
Arsenic binding site 2 out of 2 in the Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of A Two-Domain Protein Containing Predicted Php- Like Metal-Dependent Phosphoesterase (BVU_3505) From Bacteroides Vulgatus Atcc 8482 at 2.20 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As8

b:61.7
occ:1.00
AS B:CAC8 0.0 61.7 1.0
O2 B:CAC8 1.8 49.8 1.0
O1 B:CAC8 1.8 37.2 1.0
C2 B:CAC8 1.9 24.2 1.0
C1 B:CAC8 2.0 33.6 1.0
ZN B:ZN6 2.9 32.5 1.0
O B:HOH403 3.2 32.7 1.0
ZN B:ZN4 3.2 40.7 1.0
ZN B:ZN5 3.4 34.6 1.0
CE1 B:HIS76 3.5 29.8 1.0
NE2 B:HIS76 3.5 23.1 1.0
NE2 B:HIS216 3.7 32.0 1.0
CE1 B:HIS216 3.8 28.8 1.0
OD2 B:ASP214 4.2 34.6 1.0
OD1 B:ASP214 4.2 34.8 1.0
OD2 B:ASP51 4.3 23.9 1.0
OE1 B:GLU113 4.3 30.5 1.0
NE2 B:HIS157 4.6 26.7 1.0
OE2 B:GLU113 4.6 25.4 1.0
CG B:ASP214 4.6 32.4 1.0
NE2 B:HIS46 4.6 14.6 1.0
ND1 B:HIS122 4.6 33.2 1.0
CE1 B:HIS122 4.7 28.2 1.0
ND1 B:HIS76 4.8 28.2 1.0
CD B:GLU113 4.8 32.4 1.0
CD2 B:HIS76 4.9 26.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Jul 10 11:38:08 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy