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Arsenic in PDB 3gsk: A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch

Protein crystallography data

The structure of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch, PDB code: 3gsk was solved by B.M.Zeglis, V.C.Pierre, J.T.Kaiser, J.K.Barton, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.27 / 1.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 48.337, 48.337, 69.505, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 22.7

Other elements in 3gsk:

The structure of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch also contains other interesting chemical elements:

Rhodium (Rh) 2 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch (pdb code 3gsk). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch, PDB code: 3gsk:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 3gsk

Go back to Arsenic Binding Sites List in 3gsk
Arsenic binding site 1 out of 2 in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As13

b:37.9
occ:0.50
AS B:CAC13 0.0 37.9 0.5
O2 B:CAC13 1.6 57.2 0.5
O1 B:CAC13 1.7 44.8 0.5
O2 B:CAC13 1.7 52.0 0.5
C2 B:CAC13 2.0 42.7 0.5
C1 B:CAC13 2.0 33.9 0.5
AS B:CAC13 2.7 81.2 0.5
C2 B:CAC13 3.2 42.5 0.5
O1 B:CAC13 3.4 47.9 0.5
C1 B:CAC13 4.4 34.9 0.5

Arsenic binding site 2 out of 2 in 3gsk

Go back to Arsenic Binding Sites List in 3gsk
Arsenic binding site 2 out of 2 in the A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As13

b:81.2
occ:0.50
AS B:CAC13 0.0 81.2 0.5
O2 B:CAC13 1.6 52.0 0.5
O1 B:CAC13 1.7 47.9 0.5
O2 B:CAC13 1.7 57.2 0.5
C1 B:CAC13 2.0 34.9 0.5
C2 B:CAC13 2.0 42.5 0.5
AS B:CAC13 2.7 37.9 0.5
O1 B:CAC13 2.8 44.8 0.5
C1 B:CAC13 4.1 33.9 0.5
C2 B:CAC13 4.2 42.7 0.5
C5 B:DG12 4.4 39.6 1.0
C4 B:DG12 4.4 43.0 1.0
N9 B:DG12 4.7 37.1 1.0
C6 B:DG12 4.7 42.7 1.0
N3 B:DG12 4.7 41.5 1.0
N7 B:DG12 4.7 45.0 1.0
C8 B:DG12 4.8 43.0 1.0
N1 B:DG12 4.9 47.3 1.0
C2 B:DG12 4.9 42.2 1.0

Reference:

B.M.Zeglis, V.C.Pierre, J.T.Kaiser, J.K.Barton. A Bulky Rhodium Complex Bound to An Adenosine-Adenosine Dna Mismatch: General Architecture of the Metalloinsertion Binding Mode Biochemistry V. 48 4247 2009.
ISSN: ISSN 0006-2960
PubMed: 19374348
DOI: 10.1021/BI900194E
Page generated: Tue Oct 27 16:50:18 2020

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