Atomistry » Arsenic » PDB 3g3s-3n5t » 3gws
Atomistry »
  Arsenic »
    PDB 3g3s-3n5t »
      3gws »

Arsenic in PDB 3gws: Crystal Structure of T3-Bound Thyroid Hormone Receptor

Protein crystallography data

The structure of Crystal Structure of T3-Bound Thyroid Hormone Receptor, PDB code: 3gws was solved by A.S.Nascimento, S.M.G.Dias, F.M.Nunes, R.Aparicio, I.Polikarpov, J.D.Baxter, P.Webb, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.67 / 2.20
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.974, 68.974, 131.247, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 23.3

Other elements in 3gws:

The structure of Crystal Structure of T3-Bound Thyroid Hormone Receptor also contains other interesting chemical elements:

Iodine (I) 3 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of T3-Bound Thyroid Hormone Receptor (pdb code 3gws). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Crystal Structure of T3-Bound Thyroid Hormone Receptor, PDB code: 3gws:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in 3gws

Go back to Arsenic Binding Sites List in 3gws
Arsenic binding site 1 out of 3 in the Crystal Structure of T3-Bound Thyroid Hormone Receptor


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of T3-Bound Thyroid Hormone Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
X:As294

b:59.8
occ:1.00
AS X:CAS294 0.0 59.8 1.0
CE2 X:CAS294 2.0 39.5 1.0
CE1 X:CAS294 2.0 57.5 1.0
SG X:CAS294 2.2 48.5 1.0
CB X:CAS294 3.3 45.6 1.0
CA X:CAS294 3.9 44.9 1.0
O X:LYS288 4.3 39.5 1.0
N X:CAS294 4.8 43.4 1.0
NE2 X:GLN301 4.8 47.4 1.0
CA X:LYS288 4.9 39.2 1.0
O X:CAS294 4.9 51.0 1.0
C X:CAS294 5.0 48.7 1.0

Arsenic binding site 2 out of 3 in 3gws

Go back to Arsenic Binding Sites List in 3gws
Arsenic binding site 2 out of 3 in the Crystal Structure of T3-Bound Thyroid Hormone Receptor


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of T3-Bound Thyroid Hormone Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
X:As388

b:88.6
occ:1.00
AS X:CAS388 0.0 88.6 1.0
CE2 X:CAS388 2.0 0.6 1.0
CE1 X:CAS388 2.0 78.0 1.0
SG X:CAS388 2.2 59.5 1.0
O X:HOH22 2.8 44.4 1.0
CB X:CAS388 3.3 49.4 1.0
CA X:CAS388 4.0 51.1 1.0
NH2 X:ARG391 4.7 68.4 1.0
CB X:ARG391 4.7 54.7 1.0
N X:CAS388 4.8 50.6 1.0
CZ X:ARG391 4.9 66.5 1.0

Arsenic binding site 3 out of 3 in 3gws

Go back to Arsenic Binding Sites List in 3gws
Arsenic binding site 3 out of 3 in the Crystal Structure of T3-Bound Thyroid Hormone Receptor


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Crystal Structure of T3-Bound Thyroid Hormone Receptor within 5.0Å range:
probe atom residue distance (Å) B Occ
X:As434

b:81.0
occ:1.00
AS X:CAS434 0.0 81.0 1.0
CE2 X:CAS434 2.0 74.9 0.5
CE1 X:CAS434 2.0 52.6 0.5
SG X:CAS434 2.2 46.6 0.5
CB X:CAS434 3.2 33.3 1.0
CG1 X:VAL348 4.1 29.3 1.0
CA X:CAS434 4.7 33.6 1.0
CG2 X:VAL348 4.8 30.0 1.0
CG2 X:VAL349 4.9 26.2 1.0
O X:MET430 4.9 30.6 1.0

Reference:

A.S.Nascimento, S.M.G.Dias, F.M.Nunes, R.Aparicio, A.L.B.Ambrosio, L.Bleicher, A.C.M.Figueira, M.A.M.Santos, M.De Oliveira Neto, H.Fischer, M.Togashi, A.F.Craievich, R.C.Garratt, J.D.Baxter, P.Webb, I.Polikarpov. Structural Rearrangements in the Thyroid Hormone Receptor Hinge Domain and Their Putative Role in the Receptor Function J.Mol.Biol. V. 360 586 2006.
ISSN: ISSN 0022-2836
PubMed: 16781732
DOI: 10.1016/J.JMB.2006.05.008
Page generated: Tue Oct 27 16:50:20 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy