Arsenic in PDB 3kzp: Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes

The structure of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes, PDB code: 3kzp was solved by M.M.Klimecka, M.Chruszcz, M.D.Zimmerman, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.766, 92.040, 96.210, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 23.9

The structure of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes also contains other interesting chemical elements:

Calcium	(Ca)	2 atoms
Chlorine	(Cl)	6 atoms

The binding sites of Arsenic atom in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes (pdb code 3kzp). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes, PDB code: 3kzp:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range: probe atom residue distance (Å) B Occ A:As241 b:88.2 occ:1.00 AS A:CAC241 0.0 88.2 1.0 O2 A:CAC241 1.7 87.1 1.0 O1 A:CAC241 1.7 87.3 1.0 C2 A:CAC241 2.0 86.5 1.0 C1 A:CAC241 2.0 86.2 1.0 O A:HOH320 3.6 28.0 1.0 O A:HOH470 3.8 27.4 1.0 NE A:ARG74 3.9 11.0 1.0 NH2 A:ARG74 4.2 12.2 1.0 CZ A:ARG74 4.5 11.8 1.0 O A:HOH507 4.7 32.1 1.0 CD A:ARG74 4.9 12.2 1.0

Arsenic binding site 2 out of 2 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range: probe atom residue distance (Å) B Occ B:As239 b:86.9 occ:1.00 AS B:CAC239 0.0 86.9 1.0 O2 B:CAC239 1.7 85.6 1.0 O1 B:CAC239 1.7 84.7 1.0 C2 B:CAC239 2.0 85.9 1.0 C1 B:CAC239 2.0 84.9 1.0 NE B:ARG74 3.8 11.3 1.0 O B:HOH267 3.9 25.2 1.0 NH2 B:ARG74 4.1 12.1 1.0 O B:HOH348 4.4 22.8 1.0 CZ B:ARG74 4.5 12.8 1.0 CD B:ARG74 4.8 12.5 1.0 CB B:ARG74 4.9 13.1 1.0

M.M.Klimecka, M.Chruszcz, M.D.Zimmerman, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor. Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes To Be Published.