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Arsenic in PDB 3kzp: Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes

Protein crystallography data

The structure of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes, PDB code: 3kzp was solved by M.M.Klimecka, M.Chruszcz, M.D.Zimmerman, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.766, 92.040, 96.210, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 23.9

Other elements in 3kzp:

The structure of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 6 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes (pdb code 3kzp). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes, PDB code: 3kzp:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 3kzp

Go back to Arsenic Binding Sites List in 3kzp
Arsenic binding site 1 out of 2 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As241

b:88.2
occ:1.00
AS A:CAC241 0.0 88.2 1.0
O2 A:CAC241 1.7 87.1 1.0
O1 A:CAC241 1.7 87.3 1.0
C2 A:CAC241 2.0 86.5 1.0
C1 A:CAC241 2.0 86.2 1.0
O A:HOH320 3.6 28.0 1.0
O A:HOH470 3.8 27.4 1.0
NE A:ARG74 3.9 11.0 1.0
NH2 A:ARG74 4.2 12.2 1.0
CZ A:ARG74 4.5 11.8 1.0
O A:HOH507 4.7 32.1 1.0
CD A:ARG74 4.9 12.2 1.0

Arsenic binding site 2 out of 2 in 3kzp

Go back to Arsenic Binding Sites List in 3kzp
Arsenic binding site 2 out of 2 in the Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As239

b:86.9
occ:1.00
AS B:CAC239 0.0 86.9 1.0
O2 B:CAC239 1.7 85.6 1.0
O1 B:CAC239 1.7 84.7 1.0
C2 B:CAC239 2.0 85.9 1.0
C1 B:CAC239 2.0 84.9 1.0
NE B:ARG74 3.8 11.3 1.0
O B:HOH267 3.9 25.2 1.0
NH2 B:ARG74 4.1 12.1 1.0
O B:HOH348 4.4 22.8 1.0
CZ B:ARG74 4.5 12.8 1.0
CD B:ARG74 4.8 12.5 1.0
CB B:ARG74 4.9 13.1 1.0

Reference:

M.M.Klimecka, M.Chruszcz, M.D.Zimmerman, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, W.Minor. Crystal Structure of Putative Diguanylate Cyclase/Phosphodiesterase From Listaria Monocytigenes To Be Published.
Page generated: Sat Dec 12 01:40:46 2020

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