Chemical elements
  Arsenic
      Occurrence
      Ubiquity
      History
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    Detection of Arsenic
    Estimation of Arsenic
    Physiological Properties
    PDB 1b92-1ihu
    PDB 1ii0-1tnd
    PDB 1tql-2hmh
    PDB 2hx2-2xnq
    PDB 2xod-3htw
    PDB 3hzf-3od5
      3hzf
      3i3o
      3i7d
      3ilz
      3imy
      3iuw
      3jrn
      3jww
      3jwx
      3jwy
      3jwz
      3jzb
      3jzc
      3kp2
      3kp6
      3kzp
      3l4p
      3llm
      3lpt
      3lpu
      3m1r
      3mdo
      3msz
      3n5p
      3n5q
      3n5r
      3n5s
      3n5t
      3n67
      3n68
      3n69
      3n6a
      3n6b
      3n6c
      3n6d
      3n6e
      3n6f
      3n6g
      3nld
      3nle
      3nlf
      3nlg
      3nlh
      3nli
      3nlt
      3nlu
      3nrf
      3nse
      3nvv
      3od5
    PDB 3ouu-9nse

Arsenic in the structure of The Crystal Structure of Formimidoylglutamase From Bacillus Subtilis Subsp. Subtilis Str. 168 (pdb 3m1r)






The binding sites of Arsenic atom in the structure of The Crystal Structure of Formimidoylglutamase From Bacillus Subtilis Subsp. Subtilis Str. 168 (pdb code 3m1r). This binding sites where shown with 5.0 Angstroms radius around Arsenic atom.
The 3m1r structure was solved by K.TAN, L.BIGELOW, D.TREVINO, K.BUCK, A.JOACHIMIAK, MIDWEST CENTERFOR STRUCTURAL GENOMICS (MCSG), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)32.5-2.2
Space groupP212121
a (A)142.038
b (A)118.980
c (A)123.340
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)17.6
Rfree (%)23


Arsenic Binding Sites:

Arsenic binding site 1 out of 4 in 3m1r


Arsenic binding site 1 out of 4 in 3m1r
Click to enlarge
stereopicture of Arsenic binding site 1 out of 4 in 3m1r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Arsenic in the PDB 3m1r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Arsenic atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Phe294, B: Phe294, B: Mse297, C: Phe294, C: Cac320,

conact list:


AtomAtomDistance (A)
AsCB A:Phe2944.40
AsCD1 A:Phe2944.69
AsCD2 A:Phe2944.77
AsCG A:Phe2944.37
AsCB B:Phe2944.20
AsCD1 B:Phe2944.59
AsCD2 B:Phe2944.57
AsCG B:Phe2944.19
AsSE B:Mse2974.89
AsCB C:Phe2944.34
AsCD1 C:Phe2944.61
AsCD2 C:Phe2944.58
AsCG C:Phe2944.25
AsO1 C:Cac3201.61
AsO1 C:Cac3202.94
AsO2 C:Cac3201.61
AsO2 C:Cac3204.40
AsAS C:Cac3200.00
AsAS C:Cac3202.84
AsC2 C:Cac3201.96
AsC2 C:Cac3203.18
AsC1 C:Cac3201.96
AsC1 C:Cac3202.36

interactive model:


Arsenic binding site 2 out of 4 in 3m1r


Arsenic binding site 2 out of 4 in 3m1r
Click to enlarge
stereopicture of Arsenic binding site 2 out of 4 in 3m1r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Arsenic in the PDB 3m1r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Arsenic atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ser249, A: Mse297, B: Ser249, C: Ser249, C: Cac320,

conact list:


AtomAtomDistance (A)
AsO A:Ser2493.77
AsC A:Ser2494.69
AsCA A:Ser2494.81
AsSE A:Mse2974.64
AsCE A:Mse2974.45
AsO B:Ser2494.19
AsC B:Ser2494.99
AsCA B:Ser2494.90
AsO C:Ser2493.73
AsCB C:Ser2494.70
AsC C:Ser2494.47
AsCA C:Ser2494.36
AsO1 C:Cac3202.61
AsO1 C:Cac3201.61
AsO2 C:Cac3202.96
AsO2 C:Cac3201.60
AsAS C:Cac3202.84
AsAS C:Cac3200.00
AsC2 C:Cac3202.85
AsC2 C:Cac3201.96
AsC1 C:Cac3204.79
AsC1 C:Cac3201.97

interactive model:


Arsenic binding site 3 out of 4 in 3m1r


Arsenic binding site 3 out of 4 in 3m1r
Click to enlarge
stereopicture of Arsenic binding site 3 out of 4 in 3m1r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Arsenic in the PDB 3m1r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Arsenic atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Ser249, D: Mse297, E: Ser249, E: Mse297, F: Ser249, F: Pro252, F: Mse297, E: Cac320,

conact list:


AtomAtomDistance (A)
AsO D:Ser2494.13
AsC D:Ser2494.93
AsCA D:Ser2494.86
AsSE D:Mse2974.98
AsCE D:Mse2974.97
AsO E:Ser2494.19
AsSE E:Mse2974.92
AsCE E:Mse2974.86
AsO F:Ser2494.09
AsC F:Ser2494.91
AsCA F:Ser2494.91
AsCG F:Pro2524.89
AsSE F:Mse2974.71
AsCE F:Mse2974.71
AsO1 E:Cac3201.60
AsO1 E:Cac3202.57
AsO2 E:Cac3201.60
AsO2 E:Cac3204.27
AsAS E:Cac3200.00
AsAS E:Cac3202.67
AsC2 E:Cac3201.97
AsC2 E:Cac3202.81
AsC1 E:Cac3201.96
AsC1 E:Cac3202.71

interactive model:


Arsenic binding site 4 out of 4 in 3m1r


Arsenic binding site 4 out of 4 in 3m1r
Click to enlarge
stereopicture of Arsenic binding site 4 out of 4 in 3m1r
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Arsenic in the PDB 3m1r. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Arsenic atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Phe294, D: Mse297, E: Phe294, F: Phe294, F: Mse297, E: Cac320,

conact list:


AtomAtomDistance (A)
AsCB D:Phe2944.15
AsCE2 D:Phe2945.00
AsCD1 D:Phe2944.54
AsCD2 D:Phe2944.37
AsCG D:Phe2944.09
AsSE D:Mse2974.98
AsCB E:Phe2944.23
AsCD1 E:Phe2944.68
AsCD2 E:Phe2944.37
AsCG E:Phe2944.17
AsCB F:Phe2944.19
AsCD1 F:Phe2944.45
AsCD2 F:Phe2944.41
AsCG F:Phe2944.09
AsSE F:Mse2974.93
AsO1 E:Cac3203.10
AsO1 E:Cac3201.61
AsO2 E:Cac3204.16
AsO2 E:Cac3201.60
AsAS E:Cac3202.67
AsAS E:Cac3200.00
AsC2 E:Cac3201.95
AsC2 E:Cac3201.95
AsC1 E:Cac3203.02
AsC1 E:Cac3201.97

interactive model:




© Copyright 2008-2012 by atomistry.com