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Arsenic in PDB 3mdo: Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution, PDB code: 3mdo was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.62 / 1.91
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 99.945, 99.945, 163.020, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 19

Other elements in 3mdo:

The structure of Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 7 atoms
Chlorine (Cl) 4 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution (pdb code 3mdo). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution, PDB code: 3mdo:

Arsenic binding site 1 out of 1 in 3mdo

Go back to Arsenic Binding Sites List in 3mdo
Arsenic binding site 1 out of 1 in the Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Putative Phosphoribosylformylglycinamidine Cyclo-Ligase (BDI_2101) From Parabacteroides Distasonis Atcc 8503 at 1.91 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As394

b:37.8
occ:0.50
AS B:CAC394 0.0 37.8 0.5
O2 B:CAC394 1.7 34.0 0.5
O1 B:CAC394 1.7 20.4 0.5
C1 B:CAC394 2.0 28.9 0.5
C2 B:CAC394 2.0 32.6 0.5
CA B:CA390 3.6 32.5 1.0
O B:SER323 3.8 21.5 1.0
O B:HOH582 3.9 17.0 1.0
O B:HOH586 4.1 22.5 1.0
OG B:SER239 4.4 19.6 1.0
C B:SER323 4.6 22.2 1.0
O B:HOH585 4.6 20.7 1.0
O B:GLN322 4.7 22.8 1.0
OD1 B:ASP214 5.0 27.9 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 01:40:56 2020

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