Chemical elements
  Arsenic
      Occurrence
      Ubiquity
      History
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    Detection of Arsenic
    Estimation of Arsenic
    Physiological Properties
    PDB 1b92-1ihu
    PDB 1ii0-1tnd
    PDB 1tql-2hmh
    PDB 2hx2-2xnq
    PDB 2xod-3htw
    PDB 3hzf-3od5
    PDB 3ouu-9nse
      3ouu
      3p85
      3pb6
      3pd8
      3pqs
      3psz
      3rca
      3rqo
      3rqp
      3s2s
      3s70
      3tun
      3ucy
      3vp5
      4dmn
      4e1m
      4e1n
      4fsd
      4nse
      5nse
      6nse
      7nse
      8nse
      9nse

Arsenic in the structure of X-Ray Structure Of the Ligand-Binding Core of GLUA2 in Complex With (S)-7-Hpca At 2.5 A Resolution (pdb 3pd8)






The binding sites of Arsenic atom in the structure of X-Ray Structure Of the Ligand-Binding Core of GLUA2 in Complex With (S)-7-Hpca At 2.5 A Resolution (pdb code 3pd8). This binding sites where shown with 5.0 Angstroms radius around Arsenic atom.
The 3pd8 structure was solved by K.FRYDENVANG, J.S.KASTRUP, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)29.3-2.5
Space groupP21212
a (A)114.618
b (A)164.002
c (A)47.620
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)17.5
Rfree (%)26.1


Arsenic Binding Sites:

Arsenic binding site 1 out of 1 in 3pd8


Arsenic binding site 1 out of 1 in 3pd8
Click to enlarge
stereopicture of Arsenic binding site 1 out of 1 in 3pd8
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Arsenic in the PDB 3pd8. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Arsenic atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Glu39, B: Lys42, B: His43, C: Arg160, C: Ala162, C: Glu163, C: Ser165, B: Zn260, C: Cac263, C: Hoh273, C: Hoh354, C: Hoh378,

conact list:


AtomAtomDistance (A)
AsOE1 B:Glu394.94
AsCD B:Lys424.55
AsNE2 B:His434.03
AsCD2 B:His434.98
AsCE1 B:His434.13
AsO C:Arg1604.85
AsO C:Ala1624.48
AsOE1 C:Glu1634.69
AsOE2 C:Glu1634.06
AsCD C:Glu1634.71
AsN C:Ser1654.73
AsCB C:Ser1654.05
AsOG C:Ser1654.01
AsCA C:Ser1654.37
AsZN B:Zn2603.27
AsO1 C:Cac2631.74
AsO2 C:Cac2631.74
AsAS C:Cac2630.00
AsC2 C:Cac2631.97
AsC1 C:Cac2631.97
AsO C:Hoh2734.24
AsO C:Hoh3543.77
AsO C:Hoh3784.33

interactive model:




© Copyright 2008-2012 by atomistry.com