Atomistry » Arsenic » PDB 3sr6-4cx0 » 3w88
Atomistry »
  Arsenic »
    PDB 3sr6-4cx0 »
      3w88 »

Arsenic in PDB 3w88: Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200

Enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200

All present enzymatic activity of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200:
1.3.98.1;

Protein crystallography data

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200, PDB code: 3w88 was solved by D.K.Inaoka, S.Hashimoto, J.R.Rocha, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Kuranaga, T.Shiba, E.O.Balogun, K.Sakamoto, S.Suzuki, C.A.Montanari, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.96 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.974, 71.518, 129.537, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 16.6

Other elements in 3w88:

The structure of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 also contains other interesting chemical elements:

Cobalt (Co) 3 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 (pdb code 3w88). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 4 binding sites of Arsenic where determined in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200, PDB code: 3w88:
Jump to Arsenic binding site number: 1; 2; 3; 4;

Arsenic binding site 1 out of 4 in 3w88

Go back to Arsenic Binding Sites List in 3w88
Arsenic binding site 1 out of 4 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As415

b:22.9
occ:1.00
 AS A:CAC415 0.0 22.9 1.0
O2 A:CAC415 1.8 11.6 1.0
O1 A:CAC415 1.8 17.1 1.0
C2 A:CAC415 2.0 21.3 1.0
C1 A:CAC415 2.1 18.9 1.0
OD2 A:ASP28 3.6 6.8 1.0
O3 A:GOL409 3.7 30.6 1.0
O A:HOH784 3.8 26.3 1.0
OD1 A:ASP28 3.9 7.6 1.0
O A:HOH782 3.9 20.6 1.0
O A:HOH590 4.1 19.3 1.0
O A:HOH707 4.1 23.1 1.0
CG A:ASP28 4.2 6.6 1.0
O A:HOH544 4.2 7.3 1.0
C3 A:GOL409 4.4 31.4 1.0
O A:HOH574 4.7 11.8 1.0
O A:HOH848 4.9 27.5 1.0
O A:HOH604 4.9 17.5 1.0
O A:HOH744 5.0 27.4 1.0
O A:HOH625 5.0 15.0 1.0

Arsenic binding site 2 out of 4 in 3w88

Go back to Arsenic Binding Sites List in 3w88
Arsenic binding site 2 out of 4 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As416

b:34.7
occ:1.00
 AS A:CAC416 0.0 34.7 1.0
O2 A:CAC416 1.8 39.2 1.0
O1 A:CAC416 1.9 30.1 1.0
C1 A:CAC416 2.0 43.6 1.0
C2 A:CAC416 2.0 36.9 1.0
C1 A:EDO427 3.8 52.4 1.0
O A:LYS296 3.9 13.5 1.0
O B:HOH616 4.1 21.2 1.0
O A:HOH819 4.1 48.8 1.0
O1 A:EDO427 4.3 58.4 1.0

Arsenic binding site 3 out of 4 in 3w88

Go back to Arsenic Binding Sites List in 3w88
Arsenic binding site 3 out of 4 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As413

b:20.6
occ:1.00
 AS B:CAC413 0.0 20.6 1.0
O2 B:CAC413 1.8 16.6 1.0
O1 B:CAC413 1.8 12.2 1.0
C1 B:CAC413 2.0 17.7 1.0
C2 B:CAC413 2.1 18.8 1.0
OD2 B:ASP28 3.6 6.0 1.0
O1 B:GOL404 3.6 16.7 0.5
O B:HOH754 3.9 17.1 1.0
O B:HOH593 3.9 19.4 1.0
OD1 B:ASP28 3.9 7.3 1.0
O B:HOH542 4.2 7.0 1.0
O1 B:GOL404 4.2 28.8 0.5
CG B:ASP28 4.2 6.4 1.0
C1 B:GOL404 4.2 27.1 0.5
C1 B:GOL404 4.4 18.3 0.5
O B:HOH582 4.7 12.4 1.0
O B:HOH621 4.9 19.6 1.0
O B:HOH912 4.9 33.0 1.0
O B:HOH755 4.9 25.8 1.0
O B:HOH579 5.0 14.5 1.0

Arsenic binding site 4 out of 4 in 3w88

Go back to Arsenic Binding Sites List in 3w88
Arsenic binding site 4 out of 4 in the Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 4 of Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As414

b:0.9
occ:1.00
 AS B:CAC414 0.0 0.9 1.0
O1 B:CAC414 1.7 0.9 1.0
O2 B:CAC414 1.7 0.5 1.0
C1 B:CAC414 2.0 0.3 1.0
C2 B:CAC414 2.0 0.3 1.0
O3 B:GOL408 3.6 34.0 1.0
O B:HOH907 3.8 43.0 1.0
C3 B:GOL406 4.1 40.3 1.0
O B:PRO241 4.2 16.4 1.0
O3 B:GOL406 4.3 36.6 1.0
C3 B:GOL408 4.4 38.8 1.0
O2 B:GOL408 4.6 47.5 1.0

Reference:

D.K.Inaoka, S.Hashimoto, J.R.Rocha, M.Iida, T.Tabuchi, N.Lee, S.Matsuoka, T.Kuranaga, T.Shiba, E.O.Balogun, K.Sakamoto, S.Suzuki, C.A.Montanari, T.Nara, T.Aoki, M.Inoue, T.Honma, A.Tanaka, S.Harada, K.Kita. Structure of Trypanosoma Cruzi Dihydroorotate Dehydrogenase in Complex with Sh-1-200 To Be Published.
Page generated: Wed Jul 10 11:56:46 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy