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Arsenic in PDB 4n4r: Structure Basis of Lipopolysaccharide Biogenesis

Protein crystallography data

The structure of Structure Basis of Lipopolysaccharide Biogenesis, PDB code: 4n4r was solved by H.Dong, Q.Xiang, Z.Wang, N.G.Paterson, C.He, Y.Zhang, W.Wang, C.Dong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 107.49 / 2.80
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 173.430, 76.082, 213.596, 90.00, 111.52, 90.00
R / Rfree (%) 28.5 / 30.5

Other elements in 4n4r:

The structure of Structure Basis of Lipopolysaccharide Biogenesis also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Structure Basis of Lipopolysaccharide Biogenesis (pdb code 4n4r). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Structure Basis of Lipopolysaccharide Biogenesis, PDB code: 4n4r:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 4n4r

Go back to Arsenic Binding Sites List in 4n4r
Arsenic binding site 1 out of 2 in the Structure Basis of Lipopolysaccharide Biogenesis


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Structure Basis of Lipopolysaccharide Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As801

b:0.1
occ:1.00
AS A:CAC801 0.0 0.1 1.0
O2 A:CAC801 1.7 0.2 1.0
O1 A:CAC801 1.7 0.0 1.0
C2 A:CAC801 2.0 1.0 1.0
C1 A:CAC801 2.0 0.4 1.0
OD2 A:ASP330 4.1 0.9 1.0
OD1 A:ASP330 4.6 0.8 1.0
CG A:ASP330 4.8 0.9 1.0

Arsenic binding site 2 out of 2 in 4n4r

Go back to Arsenic Binding Sites List in 4n4r
Arsenic binding site 2 out of 2 in the Structure Basis of Lipopolysaccharide Biogenesis


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Structure Basis of Lipopolysaccharide Biogenesis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As801

b:0.1
occ:1.00
AS C:CAC801 0.0 0.1 1.0
O2 C:CAC801 1.7 0.1 1.0
O1 C:CAC801 1.8 0.1 1.0
C1 C:CAC801 2.0 1.0 1.0
C2 C:CAC801 2.0 0.6 1.0
OD2 C:ASP330 4.0 0.3 1.0
OD1 C:ASP330 4.7 0.3 1.0
CG C:ASP330 4.8 0.3 1.0

Reference:

H.Dong, Q.Xiang, Y.Gu, Z.Wang, N.G.Paterson, P.J.Stansfeld, C.He, Y.Zhang, W.Wang, C.Dong. Structural Basis For Outer Membrane Lipopolysaccharide Insertion. Nature V. 511 52 2014.
ISSN: ISSN 0028-0836
PubMed: 24990744
DOI: 10.1038/NATURE13464
Page generated: Sat Dec 12 01:44:39 2020

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