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Arsenic in PDB 4zng: X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase

Enzymatic activity of X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase

All present enzymatic activity of X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase:
3.4.13.9;

Protein crystallography data

The structure of X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase, PDB code: 4zng was solved by O.Kgosisejo, P.Grochulski, T.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.83 / 2.25
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 212.130, 76.990, 88.920, 90.00, 112.39, 90.00
R / Rfree (%) 22 / 28

Other elements in 4zng:

The structure of X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase also contains other interesting chemical elements:

Manganese (Mn) 5 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase (pdb code 4zng). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase, PDB code: 4zng:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 4zng

Go back to Arsenic Binding Sites List in 4zng
Arsenic binding site 1 out of 2 in the X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As401

b:75.5
occ:1.00
AS B:CAC401 0.0 75.5 1.0
O2 B:CAC401 1.7 81.1 1.0
O1 B:CAC401 1.8 44.5 1.0
C2 B:CAC401 2.0 67.6 1.0
C1 B:CAC401 2.0 85.6 1.0
MN B:MN403 2.9 40.2 1.0
MN B:MN402 3.2 37.3 1.0
OD2 B:ASP232 3.5 33.7 1.0
OE1 B:GLU325 3.8 59.1 1.0
NE2 B:HIS303 3.9 50.7 1.0
OD2 B:ASP221 4.0 32.8 1.0
OE2 B:GLU325 4.2 41.0 1.0
CE1 B:HIS303 4.3 56.8 1.0
NE2 B:HIS296 4.3 41.7 1.0
OD1 B:ASP232 4.3 28.9 1.0
CG B:ASP232 4.4 36.0 1.0
CD B:GLU325 4.5 55.3 1.0
OE2 B:GLU339 4.5 33.7 1.0
OD1 B:ASP221 4.6 32.0 1.0
CG B:ASP221 4.7 34.0 1.0
OE1 B:GLU339 4.7 41.8 1.0
CD2 B:HIS296 4.8 42.6 1.0
CE2 B:PHE190 4.9 37.5 1.0

Arsenic binding site 2 out of 2 in 4zng

Go back to Arsenic Binding Sites List in 4zng
Arsenic binding site 2 out of 2 in the X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As403

b:66.5
occ:1.00
AS A:CAC403 0.0 66.5 1.0
O2 A:CAC403 1.7 57.1 1.0
O1 A:CAC403 1.8 51.0 1.0
C2 A:CAC403 1.9 54.9 1.0
C1 A:CAC403 2.0 65.7 1.0
MN A:MN401 3.0 31.3 1.0
MN A:MN402 3.1 27.3 1.0
OD2 A:ASP232 3.7 27.8 1.0
OD2 A:ASP221 3.9 23.2 1.0
NE2 A:HIS303 4.0 53.9 1.0
OD1 A:ASP232 4.1 27.6 1.0
OE1 A:GLU325 4.1 42.0 1.0
CG A:ASP232 4.3 29.2 1.0
OE2 A:GLU325 4.3 31.2 1.0
OE2 A:GLU339 4.4 26.9 1.0
NE2 A:HIS296 4.4 32.0 1.0
CE1 A:HIS303 4.6 55.1 1.0
OD1 A:ASP221 4.6 23.3 1.0
CG A:ASP221 4.7 25.6 1.0
CD A:GLU325 4.7 38.5 1.0
OE1 A:GLU339 4.7 28.6 1.0
CZ A:PHE190 4.9 32.6 1.0
CD A:GLU339 5.0 29.3 1.0

Reference:

O.Kgosisejo, P.Grochulski, T.Tanaka. X-Ray Crystallography of Recombinant Lactococcus Lactis Prolidase To Be Published.
Page generated: Wed Jul 10 12:42:17 2024

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