Arsenic in PDB 5e64: Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus

The structure of Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus, PDB code: 5e64 was solved by H.Song, J.Qi, Y.Shi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.70 / 2.40
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	165.221, 165.221, 165.221, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 24.5

The binding sites of Arsenic atom in the Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus (pdb code 5e64). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus, PDB code: 5e64:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:As715 b:54.3 occ:1.00 AS A:CAC715 0.0 54.3 1.0 O2 A:CAC715 1.7 37.6 1.0 OG A:SER57 1.8 31.0 1.0 C1 A:CAC715 2.0 35.0 1.0 C2 A:CAC715 2.0 40.6 1.0 CB A:SER57 2.9 22.7 1.0 NE2 A:HIS359 3.4 27.2 1.0 N A:SER57 3.6 21.0 1.0 CA A:SER57 3.8 24.5 1.0 ND2 A:ASN117 3.8 20.8 1.0 OD1 A:ASN117 3.9 27.6 1.0 CD2 A:HIS359 4.1 24.0 1.0 N A:GLY85 4.1 26.6 1.0 CG A:ASN117 4.3 23.0 1.0 CG A:ASP56 4.4 20.4 1.0 CB A:ASP56 4.4 18.3 1.0 CE1 A:HIS359 4.4 22.9 1.0 OD2 A:ASP56 4.6 15.4 1.0 CH2 A:TRP322 4.6 23.5 1.0 N A:ARG58 4.6 21.5 1.0 C A:SER57 4.6 24.7 1.0 OD1 A:ASP56 4.7 18.5 1.0 CZ3 A:TRP322 4.7 23.2 1.0 CA A:GLY85 4.7 23.6 1.0 C A:ASP56 4.8 21.1 1.0 CA A:SER84 4.8 19.0 1.0 C A:SER84 5.0 18.1 1.0

Arsenic binding site 2 out of 2 in the Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Hemagglutinin-Esterase-Fusion Protein Structure of Influenza D Virus within 5.0Å range: probe atom residue distance (Å) B Occ C:As711 b:49.7 occ:1.00 AS C:CAC711 0.0 49.7 1.0 O2 C:CAC711 1.7 30.1 1.0 OG C:SER57 1.8 27.0 1.0 C2 C:CAC711 2.0 38.4 1.0 C1 C:CAC711 2.0 26.1 1.0 CB C:SER57 2.8 21.0 1.0 NE2 C:HIS359 3.3 30.0 1.0 N C:SER57 3.6 20.6 1.0 CA C:SER57 3.8 20.9 1.0 ND2 C:ASN117 3.8 19.1 1.0 OD1 C:ASN117 4.0 23.1 1.0 CD2 C:HIS359 4.0 24.8 1.0 N C:GLY85 4.1 20.7 1.0 CE1 C:HIS359 4.3 29.8 1.0 CG C:ASP56 4.3 20.3 1.0 CG C:ASN117 4.3 21.0 1.0 OD2 C:ASP56 4.3 16.1 1.0 CB C:ASP56 4.4 19.6 1.0 C C:SER57 4.6 19.9 1.0 N C:ARG58 4.6 21.6 1.0 OD1 C:ASP56 4.8 16.9 1.0 CH2 C:TRP322 4.8 25.5 1.0 CA C:GLY85 4.8 17.2 1.0 C C:ASP56 4.8 18.0 1.0 CZ3 C:TRP322 4.8 26.4 1.0 CA C:SER84 4.9 23.7 1.0

H.Song, J.Qi, Z.Khedri, S.Diaz, H.Yu, X.Chen, A.Varki, Y.Shi, G.F.Gao. An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein From Newly-Identified Influenza D Virus: Basis For Its Broad Cell Tropism Plos Pathog. V. 12 05411 2016.
ISSN: ESSN 1553-7374
PubMed: 26816272
DOI: 10.1371/JOURNAL.PPAT.1005411