Arsenic in PDB 5e66: The Complex Structure of Hemagglutinin-Esterase-Fusion Mutant Protein From the Influenza D Virus with Receptor Analog 9-N-Ac-Sia

The structure of The Complex Structure of Hemagglutinin-Esterase-Fusion Mutant Protein From the Influenza D Virus with Receptor Analog 9-N-Ac-Sia, PDB code: 5e66 was solved by H.Song, J.Qi, Y.Shi, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.96 / 3.10
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	165.297, 165.297, 165.297, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 26.5

The binding sites of Arsenic atom in the The Complex Structure of Hemagglutinin-Esterase-Fusion Mutant Protein From the Influenza D Virus with Receptor Analog 9-N-Ac-Sia (pdb code 5e66). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the The Complex Structure of Hemagglutinin-Esterase-Fusion Mutant Protein From the Influenza D Virus with Receptor Analog 9-N-Ac-Sia, PDB code: 5e66:

Arsenic binding site 1 out of 1 in the The Complex Structure of Hemagglutinin-Esterase-Fusion Mutant Protein From the Influenza D Virus with Receptor Analog 9-N-Ac-Sia


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The Complex Structure of Hemagglutinin-Esterase-Fusion Mutant Protein From the Influenza D Virus with Receptor Analog 9-N-Ac-Sia within 5.0Å range: probe atom residue distance (Å) B Occ A:As501 b:0.0 occ:1.00 AS A:CAC501 0.0 0.0 1.0 OG A:SER57 1.7 95.7 1.0 O2 A:CAC501 1.7 0.8 1.0 C2 A:CAC501 2.0 0.5 1.0 C1 A:CAC501 2.0 0.9 1.0 CB A:SER57 3.0 90.7 1.0 OD1 A:ASN117 3.0 98.7 1.0 ND2 A:ASN117 3.6 0.8 1.0 NE2 A:HIS359 3.6 95.4 1.0 CG A:ASN117 3.7 95.2 1.0 N A:GLY85 3.7 0.6 1.0 OAI A:5KQ502 3.8 0.5 1.0 OAG A:5KQ502 3.9 0.3 1.0 N A:SER57 4.0 85.3 1.0 CA A:SER57 4.1 83.2 1.0 CA A:GLY85 4.1 0.7 1.0 CAF A:5KQ502 4.3 0.5 1.0 CE1 A:HIS359 4.4 90.4 1.0 CH2 A:TRP322 4.5 89.3 1.0 CD2 A:HIS359 4.5 94.2 1.0 C A:SER84 4.7 79.1 1.0 CB A:ASP56 4.7 80.0 1.0 CAH A:5KQ502 4.7 0.3 1.0 OD2 A:ASP56 4.8 80.9 1.0 CG A:ASP56 4.8 83.0 1.0 CZ3 A:TRP322 4.8 85.2 1.0 CA A:SER84 4.9 71.4 1.0 C A:SER57 5.0 75.7 1.0

H.Song, J.Qi, Z.Khedri, S.Diaz, H.Yu, X.Chen, A.Varki, Y.Shi, G.F.Gao. An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein From Newly-Identified Influenza D Virus: Basis For Its Broad Cell Tropism Plos Pathog. V. 12 05411 2016.
ISSN: ESSN 1553-7374
PubMed: 26816272
DOI: 10.1371/JOURNAL.PPAT.1005411