Atomistry » Arsenic » PDB 5hr7-5o4e » 5hr7
Atomistry »
  Arsenic »
    PDB 5hr7-5o4e »
      5hr7 »

Arsenic in PDB 5hr7: X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna

Enzymatic activity of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna

All present enzymatic activity of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna:
2.1.1.192;

Protein crystallography data

The structure of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna, PDB code: 5hr7 was solved by E.L.Schwalm, T.L.Grove, S.J.Booker, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 90.717, 70.383, 151.810, 90.00, 90.11, 90.00
R / Rfree (%) 21.6 / 24.8

Other elements in 5hr7:

The structure of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms
Iron (Fe) 8 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna (pdb code 5hr7). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna, PDB code: 5hr7:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 5hr7

Go back to Arsenic Binding Sites List in 5hr7
Arsenic binding site 1 out of 2 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As53

b:0.5
occ:1.00
AS B:CAS53 0.0 0.5 1.0
CE2 B:CAS53 2.0 95.5 1.0
CE1 B:CAS53 2.0 94.9 1.0
SG B:CAS53 2.3 83.9 1.0
CB B:CAS53 3.2 78.6 1.0
N B:CAS53 3.5 71.4 1.0
C B:TYR52 3.5 69.5 1.0
O B:HIS51 3.7 64.7 1.0
O B:TYR52 3.9 70.2 1.0
CA B:TYR52 3.9 68.5 1.0
CA B:CAS53 3.9 72.8 1.0
C B:HIS51 4.2 63.4 1.0
N B:TYR52 4.2 65.0 1.0
O B:TYR50 4.4 60.0 1.0
O B:ALA156 4.7 60.2 1.0
C B:ALA156 4.8 58.7 1.0
CB B:ALA156 4.8 54.2 1.0
CA B:LYS157 5.0 63.2 1.0

Arsenic binding site 2 out of 2 in 5hr7

Go back to Arsenic Binding Sites List in 5hr7
Arsenic binding site 2 out of 2 in the X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of X-Ray Crystal Structure of C118A Rlmn From Escherichia Coli with Cross-Linked in Vitro Transcribed Trna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As53

b:0.2
occ:1.00
AS A:CAS53 0.0 0.2 1.0
CE2 A:CAS53 2.0 97.9 1.0
CE1 A:CAS53 2.0 96.7 1.0
SG A:CAS53 2.3 83.1 1.0
CB A:CAS53 3.2 77.4 1.0
N A:CAS53 3.5 70.4 1.0
C A:TYR52 3.5 67.6 1.0
O A:HIS51 3.8 66.8 1.0
O A:TYR52 3.8 67.0 1.0
CA A:CAS53 3.9 71.9 1.0
CA A:TYR52 4.0 68.3 1.0
C A:HIS51 4.2 64.7 1.0
N A:TYR52 4.3 66.0 1.0
O A:TYR50 4.4 61.2 1.0
O A:ALA156 4.6 60.1 1.0
C A:ALA156 4.8 58.7 1.0
CA A:LYS157 4.8 63.0 1.0
CB A:ALA156 4.9 54.3 1.0
N A:LYS157 4.9 60.6 1.0

Reference:

E.L.Schwalm, T.L.Grove, S.J.Booker, A.K.Boal. Crystallographic Capture of A Radical S-Adenosylmethionine Enzyme in the Act of Modifying Trna. Science V. 352 309 2016.
ISSN: ESSN 1095-9203
PubMed: 27081063
DOI: 10.1126/SCIENCE.AAD5367
Page generated: Sat Dec 12 01:46:49 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy