Arsenic in PDB 5m11: Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis.

The structure of Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis., PDB code: 5m11 was solved by A.M.Lasica, T.Goulas, D.Mizgalska, X.Zhou, M.Ksiazek, M.Madej, Y.Guo, T.Guevara, M.Nowak, B.Potempa, A.Goel, M.Sztukowska, A.T.Prabhakar, M.Bzowska, M.Widziolek, I.B.Thogersen, J.J.Enghild, M.Simonian, A.W.Kulczyk, K.-A.Nguyen, J.Potempa, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.46 / 2.90
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	115.520, 115.520, 139.880, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 23.8

The structure of Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis. also contains other interesting chemical elements:

Zinc	(Zn)	8 atoms
Calcium	(Ca)	4 atoms
Chlorine	(Cl)	1 atom

The binding sites of Arsenic atom in the Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis. (pdb code 5m11). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis., PDB code: 5m11:

Arsenic binding site 1 out of 1 in the Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral- Microbiomic Porphyromonas Gingivalis. within 5.0Å range: probe atom residue distance (Å) B Occ A:As813 b:0.4 occ:1.00 AS A:CAC813 0.0 0.4 1.0 O2 A:CAC813 1.6 1.0 1.0 O1 A:CAC813 1.7 0.7 1.0 C1 A:CAC813 2.0 0.0 1.0 C2 A:CAC813 2.0 0.4 1.0 ZN A:ZN809 3.1 80.7 1.0 O A:HOH902 3.5 50.2 1.0 O A:GLY399 3.7 80.5 1.0 O A:HOH941 3.8 44.7 0.5 C A:GLY399 4.4 78.5 1.0 CA A:GLY399 4.5 74.3 1.0 ND1 A:HIS341 4.7 70.8 1.0 CD A:PRO401 4.8 71.2 1.0

A.M.Lasica, T.Goulas, D.Mizgalska, X.Zhou, I.De Diego, M.Ksiazek, M.Madej, Y.Guo, T.Guevara, M.Nowak, B.Potempa, A.Goel, M.Sztukowska, A.T.Prabhakar, M.Bzowska, M.Widziolek, I.B.Thgersen, J.J.Enghild, M.Simonian, A.W.Kulczyk, K.A.Nguyen, J.Potempa, F.X.Gomis-Ruth. Structural and Functional Probing of Porz, An Essential Bacterial Surface Component of the Type-IX Secretion System of Human Oral-Microbiomic Porphyromonas Gingivalis. Sci Rep V. 6 37708 2016.
ISSN: ESSN 2045-2322
PubMed: 27883039
DOI: 10.1038/SREP37708