Atomistry » Arsenic » PDB 5hrn-5o8x » 5o3x
Atomistry »
  Arsenic »
    PDB 5hrn-5o8x »
      5o3x »

Arsenic in PDB 5o3x: Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1

Protein crystallography data

The structure of Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1, PDB code: 5o3x was solved by H.Ludewig, C.M.Czekster, A.F.Bent, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 87.95 / 2.55
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 275.580, 60.850, 88.040, 90.00, 92.65, 90.00
R / Rfree (%) 21.7 / 26.3

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1 (pdb code 5o3x). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1, PDB code: 5o3x:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 5o3x

Go back to Arsenic Binding Sites List in 5o3x
Arsenic binding site 1 out of 2 in the Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As801

b:54.3
occ:1.00
AS A:CAC801 0.0 54.3 1.0
O2 A:CAC801 1.7 48.8 1.0
O1 A:CAC801 1.7 52.5 1.0
C2 A:CAC801 2.0 51.6 1.0
C1 A:CAC801 2.0 55.5 1.0
OH A:TYR481 3.7 48.0 1.0
CB A:SER562 3.8 58.7 1.0
O A:HOH956 4.1 53.2 1.0
N A:ASN563 4.1 56.4 1.0
CE2 A:PHE484 4.4 44.6 1.0
NE1 A:TRP603 4.4 51.6 1.0
CB A:ASN563 4.5 56.6 1.0
CE2 A:TRP603 4.5 51.6 1.0
OG A:SER562 4.5 58.7 1.0
CZ A:PHE484 4.6 45.0 1.0
CZ2 A:TRP603 4.6 51.7 1.0
CD2 A:PHE484 4.7 45.0 1.0
CZ A:TYR481 4.8 47.6 1.0
C A:SER562 4.9 57.4 1.0
CA A:ASN563 4.9 56.6 1.0
CA A:SER562 4.9 58.0 1.0
CD1 A:TRP603 4.9 52.0 1.0
CG2 A:VAL656 4.9 55.6 1.0

Arsenic binding site 2 out of 2 in 5o3x

Go back to Arsenic Binding Sites List in 5o3x
Arsenic binding site 2 out of 2 in the Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Structural Characterization of the Fast and Promiscuous Macrocyclase From Plant - Apo PCY1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As801

b:64.4
occ:1.00
AS B:CAC801 0.0 64.4 1.0
O2 B:CAC801 1.7 66.9 1.0
O1 B:CAC801 1.7 68.3 1.0
C2 B:CAC801 2.0 65.2 1.0
C1 B:CAC801 2.0 67.8 1.0
OH B:TYR481 3.7 46.2 1.0
CB B:SER562 3.9 52.2 1.0
N B:ASN563 4.3 49.1 1.0
NE1 B:TRP603 4.3 63.1 1.0
NH2 B:ARG655 4.4 91.4 1.0
CE2 B:TRP603 4.4 63.4 1.0
CE2 B:PHE484 4.4 52.4 1.0
CZ B:ARG655 4.5 89.4 1.0
CZ B:PHE484 4.5 54.1 1.0
OG B:SER562 4.6 52.8 1.0
CB B:ASN563 4.6 46.8 1.0
CZ2 B:TRP603 4.6 63.9 1.0
CD2 B:PHE484 4.8 51.8 1.0
CD1 B:TRP603 4.8 62.6 1.0
NE B:ARG655 4.9 89.0 1.0
CZ B:TYR481 4.9 45.1 1.0
NH1 B:ARG655 4.9 88.4 1.0
CD2 B:TRP603 5.0 63.0 1.0

Reference:

H.Ludewig, C.M.Czekster, E.Oueis, E.S.Munday, M.Arshad, S.A.Synowsky, A.F.Bent, J.H.Naismith. Characterization of the Fast and Promiscuous Macrocyclase From Plant PCY1 Enables the Use of Simple Substrates. Acs Chem. Biol. V. 13 801 2018.
ISSN: ESSN 1554-8937
PubMed: 29377663
DOI: 10.1021/ACSCHEMBIO.8B00050
Page generated: Mon Jul 7 00:27:42 2025

Last articles

Ca in 5ZCE
Ca in 5ZDM
Ca in 5ZCD
Ca in 5ZCC
Ca in 5ZCB
Ca in 5ZAC
Ca in 5Z8Y
Ca in 5Z5Y
Ca in 5Z6O
Ca in 5Z5P
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy