Arsenic in PDB 5o8x: The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa

The structure of The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa, PDB code: 5o8x was solved by T.Dominguez-Gil, R.Molina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.26 / 2.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	115.064, 116.358, 54.865, 90.00, 118.41, 90.00
R / Rfree (%)	17.7 / 22.9

The structure of The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Arsenic atom in the The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa (pdb code 5o8x). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa, PDB code: 5o8x:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:As402 b:63.7 occ:1.00 AS A:CAC402 0.0 63.7 1.0 O2 A:CAC402 1.7 73.9 1.0 O1 A:CAC402 1.7 45.2 1.0 C2 A:CAC402 1.9 61.3 1.0 C1 A:CAC402 1.9 47.1 1.0 OG A:SER174 3.7 47.4 1.0 O A:GLN169 4.0 50.2 1.0 OH A:TYR204 4.1 53.9 1.0 N A:MET171 4.2 44.7 1.0 CB A:SER174 4.4 48.5 1.0 CE2 A:TYR204 4.4 47.2 1.0 CZ A:TYR204 4.6 45.0 1.0 CA A:PHE170 4.6 45.4 1.0 O A:TYR287 4.6 58.9 1.0 CB A:MET171 4.8 53.3 1.0 O A:HOH530 4.8 62.3 1.0 CG A:MET171 4.9 53.0 1.0 C A:PHE170 4.9 50.4 1.0

Arsenic binding site 2 out of 2 in the The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of The X-Ray Structure of Catenated Lytic Transglycosylase SLTB1 From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:As402 b:62.4 occ:1.00 AS B:CAC402 0.0 62.4 1.0 O2 B:CAC402 1.7 81.8 1.0 O1 B:CAC402 1.7 50.7 1.0 C1 B:CAC402 1.9 55.8 1.0 C2 B:CAC402 1.9 46.9 1.0 OG B:SER174 3.6 51.8 1.0 O B:GLN169 4.1 44.7 1.0 OH B:TYR204 4.2 62.7 1.0 N B:MET171 4.2 47.1 1.0 CB B:SER174 4.4 48.8 1.0 CE2 B:TYR204 4.5 47.7 1.0 O B:TYR287 4.5 58.8 1.0 CG B:MET171 4.6 62.8 1.0 CZ B:TYR204 4.6 51.5 1.0 CB B:MET171 4.7 60.7 1.0 CA B:PHE170 4.7 46.5 1.0 CE B:MET171 4.9 63.4 1.0 C B:PHE170 5.0 51.7 1.0

T.Dominguez-Gil, R.Molina, D.A.Dik, E.Spink, S.Mobashery, J.A.Hermoso. X-Ray Structure of Catenated Lytic Transglycosylase SLTB1. Biochemistry V. 56 6317 2017.
ISSN: ISSN 1520-4995
PubMed: 29131935
DOI: 10.1021/ACS.BIOCHEM.7B00932