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Arsenic in PDB 5xrt: Crystal Structure of A/Minnesota/11/2010 (H3N2) Influenza Virus Hemagglutinin

Protein crystallography data

The structure of Crystal Structure of A/Minnesota/11/2010 (H3N2) Influenza Virus Hemagglutinin, PDB code: 5xrt was solved by H.Zhang, I.A.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.21 / 3.15
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 292.782, 292.782, 292.782, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 24.6

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A/Minnesota/11/2010 (H3N2) Influenza Virus Hemagglutinin (pdb code 5xrt). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Crystal Structure of A/Minnesota/11/2010 (H3N2) Influenza Virus Hemagglutinin, PDB code: 5xrt:

Arsenic binding site 1 out of 1 in 5xrt

Go back to Arsenic Binding Sites List in 5xrt
Arsenic binding site 1 out of 1 in the Crystal Structure of A/Minnesota/11/2010 (H3N2) Influenza Virus Hemagglutinin


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A/Minnesota/11/2010 (H3N2) Influenza Virus Hemagglutinin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As202

b:0.4
occ:1.00
AS B:CAC202 0.0 0.4 1.0
O1 B:CAC202 1.7 0.1 1.0
O2 B:CAC202 1.7 0.8 1.0
C2 B:CAC202 2.0 0.7 1.0
C1 B:CAC202 2.0 0.4 1.0
OE2 B:GLU128 3.5 0.9 1.0
OE2 D:GLU128 3.6 0.0 1.0
OE2 F:GLU128 3.7 0.5 1.0
CD B:GLU128 4.6 0.2 1.0
CD F:GLU128 4.7 0.7 1.0
CD D:GLU128 4.7 0.4 1.0
OE1 B:GLU128 4.8 90.2 1.0
NH2 F:ARG170 4.8 74.9 1.0
OE1 F:GLU128 5.0 0.7 1.0

Reference:

S.Bangaru, H.Zhang, I.M.Gilchuk, T.G.Voss, R.P.Irving, P.Gilchuk, P.Matta, X.Zhu, S.Lang, T.Nieusma, J.A.Richt, R.A.Albrecht, H.A.Vanderven, R.Bombardi, S.J.Kent, A.B.Ward, I.A.Wilson, J.E.Crowe. A Multifunctional Human Monoclonal Neutralizing Antibody That Targets A Unique Conserved Epitope on Influenza Ha. Nat Commun V. 9 2669 2018.
ISSN: ESSN 2041-1723
PubMed: 29991715
DOI: 10.1038/S41467-018-04704-9
Page generated: Sat Dec 12 01:48:13 2020

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