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Arsenic in PDB 6bdr: Schistosoma Mansoni (Blood Fluke) Sulfotransferase/Cidd-0000206 (Compound 9F) Complex

Protein crystallography data

The structure of Schistosoma Mansoni (Blood Fluke) Sulfotransferase/Cidd-0000206 (Compound 9F) Complex, PDB code: 6bdr was solved by A.B.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.92 / 1.66
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 141.271, 39.364, 53.627, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 19.8

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Schistosoma Mansoni (Blood Fluke) Sulfotransferase/Cidd-0000206 (Compound 9F) Complex (pdb code 6bdr). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Schistosoma Mansoni (Blood Fluke) Sulfotransferase/Cidd-0000206 (Compound 9F) Complex, PDB code: 6bdr:

Arsenic binding site 1 out of 1 in 6bdr

Go back to Arsenic Binding Sites List in 6bdr
Arsenic binding site 1 out of 1 in the Schistosoma Mansoni (Blood Fluke) Sulfotransferase/Cidd-0000206 (Compound 9F) Complex


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Schistosoma Mansoni (Blood Fluke) Sulfotransferase/Cidd-0000206 (Compound 9F) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As226

b:50.0
occ:0.59
AS A:CAS226 0.0 50.0 0.6
CE1 A:CAS226 2.0 55.0 0.6
CE2 A:CAS226 2.0 53.6 0.6
SG A:CAS226 2.3 33.7 1.0
O A:CAS226 3.3 24.9 1.0
CB A:CAS226 3.4 23.0 1.0
C A:CAS226 3.7 21.4 1.0
CA A:CAS226 4.1 20.5 1.0
O A:HOH625 4.3 49.1 1.0
O A:HOH401 4.4 35.0 1.0
N A:VAL227 4.4 20.6 1.0
CA A:VAL227 4.8 19.0 1.0

Reference:

A.Rugel, R.S.Tarpley, A.Lopez, T.Menard, M.A.Guzman, A.B.Taylor, X.Cao, D.Kovalskyy, F.D.Chevalier, T.J.C.Anderson, P.J.Hart, P.T.Loverde, S.F.Mchardy. Design, Synthesis, and Characterization of Novel Small Molecules As Broad Range Antischistosomal Agents. Acs Med Chem Lett V. 9 967 2018.
ISSN: ISSN 1948-5875
PubMed: 30344901
DOI: 10.1021/ACSMEDCHEMLETT.8B00257
Page generated: Mon Jul 7 00:34:43 2025

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