Arsenic in PDB 6ezv: The Cytotoxin Maka From Vibrio Cholerae

The structure of The Cytotoxin Maka From Vibrio Cholerae, PDB code: 6ezv was solved by K.Persson, M.Dongre, S.N.Wai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	64.575, 36.527, 73.551, 90.00, 91.25, 90.00
R / Rfree (%)	19.5 / 24.9

The binding sites of Arsenic atom in the The Cytotoxin Maka From Vibrio Cholerae (pdb code 6ezv). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the The Cytotoxin Maka From Vibrio Cholerae, PDB code: 6ezv:

Arsenic binding site 1 out of 1 in the The Cytotoxin Maka From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of The Cytotoxin Maka From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ X:As405 b:61.1 occ:0.77 AS X:CAC405 0.0 61.1 0.8 O1 X:CAC405 1.7 61.2 0.8 O2 X:CAC405 1.7 61.5 0.8 C2 X:CAC405 2.0 61.1 0.8 C1 X:CAC405 2.0 61.4 0.8 HG1 X:THR11 3.0 35.8 1.0 HE3 X:TRP339 3.2 35.6 1.0 HZ3 X:TRP339 3.3 34.5 1.0 HB2 X:PHE305 3.6 41.6 1.0 OG1 X:THR11 3.6 29.7 1.0 CE3 X:TRP339 3.8 29.6 1.0 CZ3 X:TRP339 3.8 28.7 1.0 HG21 X:THR11 3.8 36.2 1.0 CG X:PHE305 3.9 37.5 1.0 CD1 X:PHE305 4.0 39.4 1.0 HD1 X:PHE305 4.2 47.4 1.0 CB X:PHE305 4.2 34.6 1.0 HG22 X:THR301 4.2 34.1 1.0 CD2 X:PHE305 4.3 38.6 1.0 HG23 X:THR11 4.3 36.2 1.0 HG23 X:THR301 4.4 34.1 1.0 CG2 X:THR11 4.4 30.1 1.0 CE1 X:PHE305 4.5 39.4 1.0 O X:HOH579 4.5 27.4 1.0 HB3 X:PHE305 4.5 41.6 1.0 O X:HOH537 4.6 30.1 1.0 CB X:THR11 4.6 29.6 1.0 HD2 X:PHE305 4.6 46.4 1.0 CG2 X:THR301 4.7 28.4 1.0 CE2 X:PHE305 4.7 38.4 1.0 CZ X:PHE305 4.8 38.2 1.0 HG21 X:THR301 4.9 34.1 1.0 HE1 X:PHE305 4.9 47.4 1.0 HB X:THR11 5.0 35.6 1.0

M.Dongre, B.Singh, K.M.Aung, P.Larsson, R.Miftakhova, K.Persson, F.Askarian, M.Johannessen, J.Von Hofsten, J.L.Persson, M.Erhardt, S.Tuck, B.E.Uhlin, S.N.Wai. Flagella-Mediated Secretion of A Novelvibrio Choleraecytotoxin Affecting Both Vertebrate and Invertebrate Hosts. Commun Biol V. 1 59 2018.
ISSN: ESSN 2399-3642
PubMed: 30271941
DOI: 10.1038/S42003-018-0065-Z