Atomistry » Arsenic » PDB 6i5n-6wr9 » 6j6x
Atomistry »
  Arsenic »
    PDB 6i5n-6wr9 »
      6j6x »

Arsenic in PDB 6j6x: Crystal Structure of Apo Ggtaseiii

Enzymatic activity of Crystal Structure of Apo Ggtaseiii

All present enzymatic activity of Crystal Structure of Apo Ggtaseiii:
2.5.1.60;

Protein crystallography data

The structure of Crystal Structure of Apo Ggtaseiii, PDB code: 6j6x was solved by S.Goto-Ito, A.Yamagata, Y.Sato, S.Fukai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.48 / 2.96
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 88.540, 88.540, 647.581, 90.00, 90.00, 120.00
R / Rfree (%) 26.6 / 29.8

Other elements in 6j6x:

The structure of Crystal Structure of Apo Ggtaseiii also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of Apo Ggtaseiii (pdb code 6j6x). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of Apo Ggtaseiii, PDB code: 6j6x:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6j6x

Go back to Arsenic Binding Sites List in 6j6x
Arsenic binding site 1 out of 2 in the Crystal Structure of Apo Ggtaseiii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Apo Ggtaseiii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As60

b:0.1
occ:1.00
AS A:CAS60 0.0 0.1 1.0
CE2 A:CAS60 1.9 0.5 1.0
CE1 A:CAS60 1.9 0.2 1.0
SG A:CAS60 2.3 0.8 1.0
CB A:CAS60 3.3 0.8 1.0
C A:CAS60 3.6 0.9 1.0
CG2 A:VAL56 3.7 0.2 1.0
N A:VAL61 3.7 0.3 1.0
O A:CAS60 3.8 0.7 1.0
CG2 A:VAL61 4.0 0.0 1.0
CA A:VAL61 4.0 0.6 1.0
CA A:CAS60 4.1 0.3 1.0
CD1 A:LEU97 4.4 86.1 1.0
CB A:VAL61 4.5 0.4 1.0
CB A:LEU64 4.7 0.4 1.0
CB A:VAL56 4.9 98.0 1.0
CG1 A:VAL61 5.0 0.4 1.0

Arsenic binding site 2 out of 2 in 6j6x

Go back to Arsenic Binding Sites List in 6j6x
Arsenic binding site 2 out of 2 in the Crystal Structure of Apo Ggtaseiii


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of Apo Ggtaseiii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As92

b:0.3
occ:1.00
AS A:CAS92 0.0 0.3 1.0
CE1 A:CAS92 1.9 0.1 1.0
CE2 A:CAS92 1.9 0.6 1.0
SG A:CAS92 2.3 0.2 1.0
CB A:CAS92 3.3 86.6 1.0
OD1 A:ASP89 4.5 95.6 1.0
OG1 A:THR20 4.5 0.6 1.0
CA A:CAS92 4.6 76.9 1.0
O A:ILE88 4.7 87.5 1.0
C A:CAS92 4.8 82.0 1.0
O A:ASP89 4.9 83.9 1.0
CD1 A:LEU96 5.0 79.2 1.0

Reference:

S.Goto-Ito, R.Shirakawa, S.Fukai. Crystal Structure of Apo Ggtaseiii To Be Published.
Page generated: Sat Dec 12 01:49:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy