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Arsenic in PDB 6sym: Crystal Structure of Escherichia Coli Msrb (Reduced Form)

Enzymatic activity of Crystal Structure of Escherichia Coli Msrb (Reduced Form)

All present enzymatic activity of Crystal Structure of Escherichia Coli Msrb (Reduced Form):
1.8.4.12;

Protein crystallography data

The structure of Crystal Structure of Escherichia Coli Msrb (Reduced Form), PDB code: 6sym was solved by S.Napolitano, D.Zyla, R.Glockshuber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.04 / 1.63
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.390, 56.270, 85.610, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 6sym:

The structure of Crystal Structure of Escherichia Coli Msrb (Reduced Form) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of Escherichia Coli Msrb (Reduced Form) (pdb code 6sym). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of Escherichia Coli Msrb (Reduced Form), PDB code: 6sym:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6sym

Go back to Arsenic Binding Sites List in 6sym
Arsenic binding site 1 out of 2 in the Crystal Structure of Escherichia Coli Msrb (Reduced Form)


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of Escherichia Coli Msrb (Reduced Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As118

b:36.2
occ:0.90
AS A:CAF118 0.0 36.2 0.9
O1 A:CAF118 1.7 33.2 0.9
CE2 A:CAF118 1.9 26.4 0.9
CE1 A:CAF118 2.0 27.2 0.9
HE21 A:CAF118 2.5 31.7 0.9
HE22 A:CAF118 2.5 31.7 0.9
HE23 A:CAF118 2.5 31.7 0.9
SG A:CAF118 2.5 27.2 0.9
HE11 A:CAF118 2.5 32.7 0.9
HE13 A:CAF118 2.5 32.7 0.9
HE12 A:CAF118 2.5 32.7 0.9
HB3 A:CAF118 2.7 26.9 0.9
CB A:CAF118 3.1 22.4 0.9
HD1 A:HIS104 3.2 28.2 1.0
O A:CAF118 3.7 21.6 0.9
H A:HIS104 3.7 28.5 1.0
HB2 A:CAF118 3.7 26.9 0.9
HE2 A:PHE106 3.9 32.7 1.0
C A:CAF118 4.0 25.4 0.9
ND1 A:HIS104 4.1 23.5 1.0
HB2 A:HIS104 4.1 30.4 1.0
HA2 A:GLY103 4.1 25.7 1.0
HA3 A:GLY103 4.1 25.7 1.0
CA A:CAF118 4.2 22.4 0.9
HB2 A:TRP66 4.2 25.8 1.0
O A:HOH370 4.2 18.1 1.0
CD2 A:TRP66 4.2 22.2 1.0
CE3 A:TRP66 4.2 24.4 1.0
N A:HIS104 4.3 23.8 1.0
HE3 A:TRP66 4.3 29.2 1.0
CG A:TRP66 4.5 21.2 1.0
CA A:GLY103 4.5 21.4 1.0
HG23 A:THR27 4.5 34.7 1.0
HA A:CAF118 4.5 26.9 0.9
HZ A:PHE106 4.6 33.2 1.0
N A:VAL119 4.6 30.1 1.0
CZ3 A:TRP66 4.7 24.6 1.0
CE2 A:PHE106 4.7 27.2 1.0
CE2 A:TRP66 4.7 20.7 1.0
CB A:TRP66 4.7 21.5 1.0
C A:GLY103 4.8 22.3 1.0
HG21 A:THR27 4.8 34.7 1.0
CB A:HIS104 4.8 25.3 1.0
HD21 A:ASN120 4.8 29.8 1.0
HB3 A:TRP66 4.9 25.8 1.0
CG A:HIS104 4.9 24.3 1.0
H A:VAL119 4.9 36.2 1.0
HH12 A:ARG90 5.0 32.7 1.0
HA A:VAL119 5.0 34.8 1.0

Arsenic binding site 2 out of 2 in 6sym

Go back to Arsenic Binding Sites List in 6sym
Arsenic binding site 2 out of 2 in the Crystal Structure of Escherichia Coli Msrb (Reduced Form)


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of Escherichia Coli Msrb (Reduced Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As118

b:45.2
occ:0.90
AS B:CAF118 0.0 45.2 0.9
O1 B:CAF118 1.7 50.5 0.9
CE1 B:CAF118 2.0 45.4 0.9
CE2 B:CAF118 2.0 44.0 0.9
SG B:CAF118 2.4 35.5 0.9
HE21 B:CAF118 2.5 52.8 0.9
HE22 B:CAF118 2.5 52.8 0.9
HE23 B:CAF118 2.5 52.8 0.9
HE12 B:CAF118 2.5 54.5 0.9
HE13 B:CAF118 2.5 54.5 0.9
HE11 B:CAF118 2.5 54.5 0.9
HB3 B:CAF118 2.7 38.0 0.9
CB B:CAF118 3.1 31.6 0.9
HD1 B:HIS104 3.3 29.9 1.0
H B:HIS104 3.5 28.6 1.0
O B:CAF118 3.7 31.5 0.9
HB2 B:CAF118 3.8 38.0 0.9
HE2 B:PHE106 3.8 37.4 1.0
C B:CAF118 3.9 31.3 0.9
HB2 B:HIS104 4.0 28.4 1.0
HA3 B:GLY103 4.1 30.6 1.0
O B:HOH326 4.1 21.7 1.0
ND1 B:HIS104 4.2 24.9 1.0
N B:HIS104 4.2 23.8 1.0
CA B:CAF118 4.2 28.1 0.9
HA2 B:GLY103 4.2 30.6 1.0
HB2 B:TRP66 4.2 30.1 1.0
CD2 B:TRP66 4.3 26.9 1.0
CE3 B:TRP66 4.4 27.9 1.0
HE3 B:TRP66 4.4 33.5 1.0
CG B:TRP66 4.5 25.7 1.0
CA B:GLY103 4.5 25.5 1.0
HG23 B:THR27 4.6 32.9 1.0
HA B:CAF118 4.6 33.7 0.9
CE2 B:PHE106 4.7 31.2 1.0
CE2 B:TRP66 4.7 27.4 1.0
N B:VAL119 4.7 32.1 1.0
HG21 B:THR27 4.7 32.9 1.0
CB B:HIS104 4.8 23.6 1.0
HD21 B:ASN120 4.8 37.5 1.0
CB B:TRP66 4.8 25.0 1.0
C B:GLY103 4.8 24.2 1.0
HB3 B:TRP66 4.9 30.1 1.0
HZ B:PHE106 4.9 38.2 1.0
CZ3 B:TRP66 4.9 29.3 1.0
CG B:HIS104 4.9 24.0 1.0
O B:HOH322 4.9 41.1 1.0
CD1 B:TRP66 5.0 25.8 1.0

Reference:

S.Napolitano, D.Zyla, R.Glockshuber. Structure of Peptide Methionine Sulfoxide Reductase Msrb at 1.63 Angstrom Resolution To Be Published.
Page generated: Sat Dec 12 01:49:46 2020

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