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Arsenic in PDB 6v6r: Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry.

Protein crystallography data

The structure of Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry., PDB code: 6v6r was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.87 / 2.70
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 115.806, 115.806, 44.748, 90.00, 90.00, 120.00
R / Rfree (%) 24.2 / 27.9

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry. (pdb code 6v6r). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry., PDB code: 6v6r:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 6v6r

Go back to Arsenic Binding Sites List in 6v6r
Arsenic binding site 1 out of 2 in the Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As101

b:0.2
occ:1.00
OP1 A:DA65 4.0 0.0 1.0
N7 A:DG66 4.3 71.7 1.0
P A:DA65 4.4 0.9 1.0
N7 A:DA65 4.5 73.3 1.0
O6 A:DG66 4.6 68.5 1.0
H41 A:DC67 4.7 85.9 1.0
C8 A:DA65 4.9 77.7 1.0
H8 A:DA65 4.9 93.2 1.0

Arsenic binding site 2 out of 2 in 6v6r

Go back to Arsenic Binding Sites List in 6v6r
Arsenic binding site 2 out of 2 in the Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry.


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of A Bromine Derivatized Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:As101

b:0.6
occ:1.00
N7 D:DG72 3.7 79.4 1.0
O6 D:DG72 4.2 80.5 1.0
OP1 D:DG72 4.3 0.3 1.0
H71 D:DT73 4.6 82.4 1.0
C5 D:DG72 4.6 62.5 1.0
C8 D:DG72 4.7 87.8 1.0
H8 D:DG72 4.8 0.3 1.0
C6 D:DG72 4.8 73.1 1.0
O4 D:DT73 4.9 77.8 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Crystal Structure of A Self-Assembling Dna Crystal Scaffold with Rhombohedral Symmetry To Be Published.
Page generated: Wed Jul 10 13:31:17 2024

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