Arsenic in PDB 6wqg: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction, PDB code: 6wqg was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.47 / 3.00
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.932, 68.932, 60.748, 90, 90, 120
R / Rfree (%)	23.3 / 25.1

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction (pdb code 6wqg). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction, PDB code: 6wqg:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As101 b:126.4 occ:1.00 C5' B:DA5 4.9 80.5 1.0

Arsenic binding site 2 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As102 b:111.6 occ:1.00 O6 B:DG2 3.0 69.7 1.0 N7 B:DG2 3.2 65.4 1.0 C6 B:DG2 3.7 70.1 1.0 C5 B:DG2 3.8 63.2 1.0 C8 B:DG2 4.4 66.2 1.0 O4 B:DT3 4.5 83.7 1.0 N7 B:DA1 4.6 61.6 1.0 N6 A:DA12 4.8 79.7 1.0 C5 B:DA1 5.0 65.8 1.0

Arsenic binding site 3 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Duplex Version) Containing the J3 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:151.8 occ:1.00 O6 D:DG11 4.6 87.8 1.0 N7 D:DG11 4.8 81.3 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.