Arsenic in PDB 6xfc: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction, PDB code: 6xfc was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.26 / 2.76
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	68.513, 68.513, 60.773, 90, 90, 120
R / Rfree (%)	21.8 / 24.2

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction (pdb code 6xfc). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction, PDB code: 6xfc:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:103.0 occ:1.00 OP2 C:DA3 3.9 76.9 1.0 N7 C:DG4 4.3 68.7 1.0 O6 C:DG4 4.4 68.5 1.0

Arsenic binding site 2 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:195.6 occ:1.00 O6 D:DG11 4.2 81.1 1.0 N7 D:DG11 4.3 73.2 1.0 C6 D:DG11 4.9 74.7 1.0 C5 D:DG11 5.0 72.8 1.0

Arsenic binding site 3 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J19 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As102 b:175.6 occ:1.00 OP2 D:DG8 3.4 99.9 1.0 N7 D:DG8 3.6 81.4 1.0 C8 D:DG8 3.9 83.5 1.0 P D:DG8 4.8 104.0 1.0 C2' D:DT7 4.9 85.3 1.0 C5 D:DG8 4.9 75.2 1.0 N7 D:DG9 5.0 70.8 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.