Arsenic in PDB 6xfw: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction, PDB code: 6xfw was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.25 / 3.05
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	68.458, 68.458, 60.214, 90, 90, 120
R / Rfree (%)	24.3 / 25.5

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction (pdb code 6xfw). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction, PDB code: 6xfw:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:168.0 occ:1.00 N7 D:DG9 4.4 56.3 1.0 OP2 C:DT2 4.4 73.6 1.0 O6 D:DG9 4.5 67.0 1.0 OP1 C:DT2 4.5 80.9 1.0 N6 C:DA3 4.7 72.6 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J24 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:204.4 occ:1.00 O6 D:DG11 4.1 81.4 1.0 N7 D:DG11 4.1 70.8 1.0 N7 D:DG10 4.5 66.0 1.0 OP2 D:DG10 4.5 75.3 1.0 C6 D:DG11 4.8 79.6 1.0 OP1 D:DG9 4.9 71.6 1.0 C5 D:DG11 4.9 71.3 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.