Arsenic in PDB 6xgk: Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction, PDB code: 6xgk was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.34 / 3.06
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.673, 68.673, 60.122, 90, 90, 120
R / Rfree (%)	19.7 / 21.1

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction (pdb code 6xgk). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction, PDB code: 6xgk:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:154.1 occ:1.00 N7 C:DG4 4.2 70.8 1.0 O6 C:DG4 4.3 79.9 1.0 OP2 C:DA3 4.5 64.7 1.0 N7 C:DA3 4.5 68.0 1.0 OP1 C:DA2 4.6 62.3 1.0 N6 C:DA3 4.9 82.4 1.0 C5 C:DA3 5.0 65.9 1.0 C5' C:DA2 5.0 69.2 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X5 Junction Version) Containing the J35 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:140.2 occ:1.00 O6 B:DG15 3.7 88.4 1.0 O6 D:DG8 3.8 85.7 1.0 N7 D:DG8 4.3 76.7 1.0 C2' D:DT7 4.6 88.1 1.0 N4 D:DC9 4.7 74.5 1.0 C6 D:DG8 4.7 85.7 1.0 C6 B:DG15 4.7 79.9 1.0 O4 B:DT14 4.9 81.0 1.0 C5 D:DG8 4.9 75.9 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.