Arsenic in PDB 6xo5: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction, PDB code: 6xo5 was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.15 / 3.16
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.304, 68.304, 54.283, 90, 90, 120
R / Rfree (%)	25.8 / 29.5

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction (pdb code 6xo5). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction, PDB code: 6xo5:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:As101 b:214.2 occ:1.00 O6 A:DG3 3.5 112.6 1.0 N7 A:DA2 4.3 118.7 1.0 C6 A:DG3 4.5 117.9 1.0 N7 A:DG3 4.6 115.9 1.0 C5 A:DG3 5.0 122.0 1.0

Arsenic binding site 2 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:As101 b:174.2 occ:1.00 C7 C:DT3 3.4 107.4 1.0 OP1 C:DT2 3.7 92.0 1.0 O4 C:DT3 4.1 113.7 1.0 OP2 C:DT2 4.1 97.0 1.0 P C:DT2 4.4 92.0 1.0 C5 C:DT3 4.5 105.7 1.0 N7 D:DG9 4.7 96.8 1.0 C4 C:DT3 4.7 107.4 1.0

Arsenic binding site 3 out of 3 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J8 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:220.2 occ:1.00 N7 D:DG11 3.9 110.0 1.0 O6 D:DG11 4.4 114.8 1.0 N7 D:DG10 4.4 95.1 1.0 O6 D:DG10 4.4 92.7 1.0 C5 D:DG10 4.9 107.0 1.0 C5 D:DG11 4.9 112.6 1.0 C6 D:DG10 4.9 105.1 1.0 C8 D:DG11 4.9 117.5 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.