Arsenic in PDB 6xo7: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction, PDB code: 6xo7 was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.07 / 3.11
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	68.141, 68.141, 52.765, 90, 90, 120
R / Rfree (%)	21.5 / 24

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction (pdb code 6xo7). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction, PDB code: 6xo7:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As101 b:186.7 occ:1.00 H41 C:DC3 3.0 70.0 1.0 N4 C:DC3 3.6 58.3 1.0 H42 C:DC3 3.7 70.0 1.0 O6 B:DG14 3.7 58.4 1.0 O6 B:DG13 3.9 72.5 1.0 H41 D:DC9 4.4 62.4 1.0 C6 B:DG13 4.8 74.6 1.0 N7 B:DG13 4.8 78.5 1.0 C4 C:DC3 4.9 56.2 1.0 C6 B:DG14 4.9 61.2 1.0 H5 C:DC3 4.9 70.3 1.0 H42 C:DC4 4.9 72.8 1.0 N4 D:DC9 5.0 52.0 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J30 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:129.7 occ:1.00 N7 D:DG10 3.9 54.4 1.0 H5'' D:DC9 4.0 82.4 1.0 OP1 D:DC9 4.0 44.6 1.0 OP2 D:DG10 4.2 68.7 1.0 N7 D:DG11 4.2 60.3 1.0 C8 D:DG10 4.6 55.4 1.0 H8 D:DG10 4.6 66.5 1.0 C5 D:DG10 4.7 57.9 1.0 O6 D:DG10 4.7 51.0 1.0 O6 D:DG11 4.7 76.1 1.0 C5' D:DC9 4.9 68.7 1.0 C6 D:DG10 5.0 58.8 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.