Arsenic in PDB 6xu0: Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat

Protein crystallography data

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xu0 was solved by S.Grazulis, M.Zaremba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.44 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 51.909, 61.205, 103.092, 98.32, 104.96, 100.62
R / Rfree (%) 18.1 / 22.5

Other elements in 6xu0:

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Potassium (K) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat (pdb code 6xu0). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xu0:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in 6xu0

Go back to Arsenic Binding Sites List in 6xu0
Arsenic binding site 1 out of 3 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As502

b:157.4
occ:1.00
AS A:CAC502 0.0 157.4 1.0
O1 A:CAC502 1.8 125.3 1.0
O2 A:CAC502 1.8 159.2 1.0
C1 A:CAC502 2.0 111.0 1.0
C2 A:CAC502 2.0 111.4 1.0
CD2 A:TYR360 4.4 42.0 1.0
CG A:TYR360 4.6 40.3 1.0
CE2 A:TYR361 4.6 49.2 1.0
CE2 A:TYR360 4.7 48.8 1.0
OH A:TYR361 4.8 58.2 1.0
CD1 A:TYR360 4.9 45.7 1.0

Arsenic binding site 2 out of 3 in 6xu0

Go back to Arsenic Binding Sites List in 6xu0
Arsenic binding site 2 out of 3 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As503

b:160.3
occ:1.00
AS A:CAC503 0.0 160.3 1.0
O2 A:CAC503 1.8 99.4 1.0
O1 A:CAC503 1.8 77.7 1.0
C1 A:CAC503 2.0 72.7 1.0
C2 A:CAC503 2.0 70.6 1.0
O A:GLY409 3.7 49.6 1.0
C A:GLY409 4.2 39.4 1.0
O A:GLY408 4.2 54.6 1.0
CD2 A:TYR410 4.5 54.5 1.0
N A:TYR410 4.5 36.3 1.0
CE2 A:TYR410 4.6 53.0 1.0
CA A:TYR410 4.6 41.3 1.0
CG A:TYR410 4.7 38.3 1.0
CZ A:TYR410 4.8 52.9 1.0
CD1 A:TYR410 4.9 42.9 1.0
CA A:GLY409 4.9 36.5 1.0
CE1 A:TYR410 5.0 55.3 1.0

Arsenic binding site 3 out of 3 in 6xu0

Go back to Arsenic Binding Sites List in 6xu0
Arsenic binding site 3 out of 3 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As503

b:138.3
occ:1.00
AS B:CAC503 0.0 138.3 1.0
O1 B:CAC503 1.8 91.2 1.0
O2 B:CAC503 1.8 86.0 1.0
C1 B:CAC503 2.0 62.1 1.0
C2 B:CAC503 2.0 58.9 1.0
O B:GLY408 4.1 60.7 1.0
O B:GLY409 4.2 45.0 1.0
O B:HOH622 4.4 46.0 1.0
O B:HOH609 4.4 70.8 1.0
C B:GLY409 4.4 42.5 1.0
CE1 B:TYR410 4.5 41.5 1.0
CD1 B:TYR410 4.6 38.1 1.0
CZ B:TYR410 4.6 41.1 1.0
NZ B:LYS125 4.7 62.1 1.0
CG B:TYR410 4.7 37.0 1.0
N B:TYR410 4.8 41.0 1.0
CE B:LYS125 4.8 73.7 1.0
CE2 B:TYR410 4.8 46.9 1.0
CD2 B:TYR410 4.8 40.2 1.0
CA B:TYR410 4.9 39.7 1.0

Reference:

E.Golovinas, E.Manakova, G.Sasnauskas, M.Zaremba. Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'-Patcgtggccacgat To Be Published.
Page generated: Sat Apr 17 13:24:25 2021

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy