Arsenic in PDB 6xup: Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xup was solved by S.Grazulis, M.Zaremba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.72 / 1.90
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	51.798, 60.872, 101.718, 76.56, 75.59, 79.39
R / Rfree (%)	18.1 / 22.4

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat also contains other interesting chemical elements:

Potassium	(K)	1 atom
Magnesium	(Mg)	3 atoms
Chlorine	(Cl)	1 atom

The binding sites of Arsenic atom in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat (pdb code 6xup). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xup:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range: probe atom residue distance (Å) B Occ A:As515 b:159.5 occ:1.00 AS A:CAC515 0.0 159.5 1.0 O1 A:CAC515 1.7 82.9 1.0 O2 A:CAC515 1.7 92.3 1.0 C2 A:CAC515 2.0 62.1 1.0 C1 A:CAC515 2.0 100.5 1.0 O A:HOH601 3.8 55.2 1.0 O A:GLY408 4.5 47.2 1.0 CE2 A:TYR410 4.6 49.5 1.0 CZ A:TYR410 4.7 48.6 1.0 CD2 A:TYR410 4.8 45.9 1.0 O A:GLY409 4.9 54.7 1.0

Arsenic binding site 2 out of 2 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range: probe atom residue distance (Å) B Occ B:As505 b:174.0 occ:1.00 AS B:CAC505 0.0 174.0 1.0 O1 B:CAC505 1.7 93.4 1.0 O2 B:CAC505 1.7 106.7 1.0 C2 B:CAC505 2.0 63.9 1.0 C1 B:CAC505 2.0 51.8 1.0 O B:HOH628 3.6 77.4 1.0 O B:GLY408 3.9 69.4 1.0 O B:GLY409 4.0 48.2 1.0 C B:GLY409 4.2 48.0 1.0 CA B:GLY409 4.7 47.1 1.0 CE1 B:TYR410 4.7 43.4 1.0 N B:TYR410 4.7 39.4 1.0 C B:GLY408 4.7 61.4 1.0 CD1 B:TYR410 4.7 36.1 1.0 CZ B:TYR410 4.8 40.8 1.0 CG B:TYR410 4.9 41.0 1.0 CE2 B:TYR410 5.0 38.1 1.0

E.Golovinas, E.Manakova, G.Sasnauskas, M.Zaremba. Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'-Patcgtggccacgat To Be Published.