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Arsenic in PDB 7cw1: Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).

Protein crystallography data

The structure of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate)., PDB code: 7cw1 was solved by K.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.19 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.065, 61.587, 110.387, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 19.1

Other elements in 7cw1:

The structure of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). also contains other interesting chemical elements:

Sodium (Na) 1 atom

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). (pdb code 7cw1). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate)., PDB code: 7cw1:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in 7cw1

Go back to Arsenic Binding Sites List in 7cw1
Arsenic binding site 1 out of 2 in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As201

b:51.0
occ:1.00
AS A:CAD201 0.0 51.0 1.0
O2 A:CAD201 1.8 31.5 1.0
C1 A:CAD201 2.0 41.6 1.0
O1 A:CAD201 2.0 32.7 1.0
C2 A:CAD201 2.0 41.5 1.0
O A:HOH371 3.7 7.9 1.0
O A:HOH310 3.7 16.1 1.0
O A:HOH329 3.9 18.3 1.0
O B:HOH333 4.1 25.0 1.0
N A:GLY37 4.1 9.6 1.0
O A:GLY38 4.2 8.0 1.0
N A:GLY38 4.4 8.2 1.0
CB B:ALA139 4.5 10.2 1.0
NH1 A:ARG32 4.6 11.2 1.0
CA A:GLY37 4.7 9.6 1.0
O A:HOH346 4.7 17.6 1.0
C A:GLY37 4.9 8.9 1.0

Arsenic binding site 2 out of 2 in 7cw1

Go back to Arsenic Binding Sites List in 7cw1
Arsenic binding site 2 out of 2 in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase-Like Enzyme From the Phyllosphere Yeast, Pseudozyma Antarctica, Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As201

b:7.2
occ:1.00
AS B:CAD201 0.0 7.2 1.0
O2 B:CAD201 1.8 7.0 1.0
O1 B:CAD201 1.8 6.5 1.0
C2 B:CAD201 1.9 7.2 1.0
C1 B:CAD201 1.9 7.0 1.0
OG B:SER82 2.7 5.1 1.0
O B:HOH301 3.4 7.6 1.0
OG1 B:THR14 3.5 6.7 1.0
CB B:SER82 3.8 5.3 1.0
OE1 B:GLN51 3.8 7.0 1.0
N B:GLN83 3.9 5.0 1.0
NE2 B:HIS175 3.9 4.3 1.0
O B:HOH402 4.0 13.8 1.0
CB B:THR14 4.1 6.0 1.0
N B:THR14 4.4 5.7 1.0
CB B:GLN83 4.5 5.2 1.0
CD B:GLN51 4.5 7.7 1.0
C B:SER82 4.5 5.0 1.0
CA B:SER82 4.6 5.1 1.0
CA B:GLN83 4.6 5.0 1.0
NE2 B:GLN51 4.7 7.3 1.0
CE1 B:HIS175 4.8 4.6 1.0
CD2 B:HIS175 4.8 4.7 1.0
CD1 B:ILE171 4.9 7.3 1.0
CA B:THR14 4.9 5.8 1.0
CG1 B:ILE171 4.9 7.1 1.0
CG2 B:VAL162 5.0 4.6 1.0

Reference:

K.Suzuki, K.Suzuki. N/A N/A.
Page generated: Wed Jul 10 13:39:43 2024

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