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Arsenic in PDB 7cy9: Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).

Enzymatic activity of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).

All present enzymatic activity of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).:
3.1.1.74;

Protein crystallography data

The structure of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate)., PDB code: 7cy9 was solved by K.Suzuki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.69 / 1.36
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 34.886, 43.517, 51.724, 103.78, 92.42, 101.49
R / Rfree (%) 12.4 / 16.9

Other elements in 7cy9:

The structure of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). also contains other interesting chemical elements:

Sodium (Na) 4 atoms

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). (pdb code 7cy9). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 3 binding sites of Arsenic where determined in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate)., PDB code: 7cy9:
Jump to Arsenic binding site number: 1; 2; 3;

Arsenic binding site 1 out of 3 in 7cy9

Go back to Arsenic Binding Sites List in 7cy9
Arsenic binding site 1 out of 3 in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As201

b:14.9
occ:1.00
AS A:CAD201 0.0 14.9 1.0
O2 A:CAD201 1.7 14.6 1.0
C2 A:CAD201 1.9 12.7 1.0
O1 A:CAD201 1.9 25.2 1.0
C1 A:CAD201 1.9 12.3 1.0
OG A:SER106 2.6 9.2 1.0
OG A:SER28 3.5 9.5 1.0
CB A:SER106 3.7 7.9 1.0
CB A:SER28 3.8 11.4 1.0
O A:HOH466 4.1 22.3 1.0
OD1 A:ASN70 4.1 9.6 1.0
NE2 A:HIS174 4.2 7.9 1.0
N A:GLN107 4.2 6.8 1.0
N A:SER28 4.2 9.2 1.0
ND2 A:ASN70 4.3 10.3 1.0
O A:HOH383 4.4 26.5 1.0
CG A:ASN70 4.5 9.5 1.0
CA A:SER28 4.6 9.1 1.0
CG2 A:VAL170 4.7 10.2 1.0
CA A:SER106 4.7 6.2 1.0
C A:SER106 4.9 6.8 1.0
CD2 A:HIS174 4.9 7.4 1.0
CB A:GLN107 4.9 6.8 1.0

Arsenic binding site 2 out of 3 in 7cy9

Go back to Arsenic Binding Sites List in 7cy9
Arsenic binding site 2 out of 3 in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:As202

b:17.8
occ:1.00
AS A:CAD202 0.0 17.8 1.0
O2 A:CAD202 1.8 18.8 1.0
O1 A:CAD202 1.9 21.5 1.0
C2 A:CAD202 1.9 18.7 1.0
C1 A:CAD202 2.0 16.4 1.0
O A:HOH335 3.5 20.6 1.0
O A:HOH306 3.6 17.9 1.0
O A:HOH308 3.7 24.8 1.0
O A:HOH307 3.7 17.4 1.0
O A:HOH310 3.8 26.1 1.0
O A:HOH389 3.9 23.1 1.0
O B:HOH437 3.9 23.4 1.0
O B:HOH385 4.4 14.0 1.0
O B:VAL155 4.5 7.7 1.0
O A:VAL155 4.6 7.9 1.0
O A:HOH394 4.6 21.9 1.0
CD1 A:TYR156 4.6 7.6 1.0
CE1 A:TYR156 4.6 6.8 1.0
CD1 B:TYR156 4.8 7.5 1.0
CE1 B:TYR156 4.8 8.2 1.0

Arsenic binding site 3 out of 3 in 7cy9

Go back to Arsenic Binding Sites List in 7cy9
Arsenic binding site 3 out of 3 in the Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate).


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 3 of Crystal Structure of A Biodegradable Plastic-Degrading Cutinase From Paraphoma Sp. B47-9 Solved By Getting the Phase From Anomalous Scattering of Uncovalently Coordinated Arsenic (Cacodylate). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:As201

b:11.4
occ:1.00
AS B:CAD201 0.0 11.4 1.0
O2 B:CAD201 1.7 13.7 1.0
O1 B:CAD201 1.8 13.0 1.0
C1 B:CAD201 1.9 13.1 1.0
C2 B:CAD201 1.9 11.1 1.0
OG B:SER106 2.7 12.1 1.0
O B:HOH301 3.5 12.7 1.0
OG B:SER28 3.5 7.8 1.0
CB B:SER106 3.8 7.4 1.0
NE2 B:HIS174 3.9 9.1 1.0
OD1 B:ASN70 3.9 7.8 1.0
CB B:SER28 4.0 6.8 1.0
N B:GLN107 4.1 5.8 1.0
ND2 B:ASN70 4.2 8.0 1.0
CG B:ASN70 4.3 7.8 1.0
N B:SER28 4.5 7.8 1.0
CG2 B:VAL170 4.5 9.0 1.0
O B:HOH331 4.6 27.5 1.0
CA B:SER106 4.7 6.2 1.0
CE1 B:HIS174 4.7 8.5 1.0
CD2 B:HIS174 4.7 7.3 1.0
C B:SER106 4.8 6.2 1.0
CA B:SER28 4.8 6.7 1.0
CB B:GLN107 4.9 6.4 1.0

Reference:

K.Suzuki, K.Suzuki. N/A N/A.
Page generated: Wed Jul 10 13:40:00 2024

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