Arsenic in PDB 7jft: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction, PDB code: 7jft was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.56 / 3.16
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	69.111, 69.111, 56.404, 90, 90, 120
R / Rfree (%)	22.4 / 24.7

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction (pdb code 7jft). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total 2 binding sites of Arsenic where determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction, PDB code: 7jft:
Jump to Arsenic binding site number: 1; 2;

Arsenic binding site 1 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:As101 b:175.3 occ:1.00 H21 B:DG13 3.3 140.9 1.0 H4' B:DA14 3.6 129.7 1.0 H5'' B:DA14 4.0 123.0 1.0 O4' B:DA14 4.0 109.5 1.0 N2 B:DG13 4.1 117.1 1.0 C4' B:DA14 4.2 107.8 1.0 H21 C:DG5 4.2 123.1 1.0 N3 B:DG13 4.5 118.0 1.0 C5' B:DA14 4.6 102.2 1.0 H22 B:DG13 4.6 140.9 1.0 C2 B:DG13 4.7 113.1 1.0 H1' B:DG13 4.9 123.7 1.0 H5' B:DA14 5.0 123.0 1.0 N2 C:DG5 5.0 102.3 1.0

Arsenic binding site 2 out of 2 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 2 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Junction Version) Containing the J2 Immobile Holliday Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:As101 b:174.4 occ:1.00 OP2 D:DG10 4.3 101.2 1.0 O6 D:DG11 4.4 93.1 1.0 N7 D:DG11 4.5 87.3 1.0 N7 D:DG10 4.7 86.7 1.0 H5' D:DC9 4.8 117.5 1.0 OP1 D:DC9 4.9 78.8 1.0 O6 D:DG10 5.0 84.6 1.0

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.