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Arsenic in PDB 7jip: Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Junction Version) Containing the J22 Immobile Holliday Junction with R3 Symmetry

Protein crystallography data

The structure of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Junction Version) Containing the J22 Immobile Holliday Junction with R3 Symmetry, PDB code: 7jip was solved by C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.06 / 3.16
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 113.022, 113.022, 49.338, 90, 90, 120
R / Rfree (%) 21.4 / 23.6

Arsenic Binding Sites:

The binding sites of Arsenic atom in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Junction Version) Containing the J22 Immobile Holliday Junction with R3 Symmetry (pdb code 7jip). This binding sites where shown within 5.0 Angstroms radius around Arsenic atom.
In total only one binding site of Arsenic was determined in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Junction Version) Containing the J22 Immobile Holliday Junction with R3 Symmetry, PDB code: 7jip:

Arsenic binding site 1 out of 1 in 7jip

Go back to Arsenic Binding Sites List in 7jip
Arsenic binding site 1 out of 1 in the Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Junction Version) Containing the J22 Immobile Holliday Junction with R3 Symmetry


Mono view


Stereo pair view

A full contact list of Arsenic with other atoms in the As binding site number 1 of Self-Assembly of A 3D Dna Crystal Lattice (4X6 Scramble Junction Version) Containing the J22 Immobile Holliday Junction with R3 Symmetry within 5.0Å range:
probe atom residue distance (Å) B Occ
C:As101

b:192.3
occ:1.00
N7 C:DG5 4.2 100.2 1.0
OP2 C:DC4 4.5 114.4 1.0
C5 C:DC4 4.5 97.0 1.0
O6 C:DG5 4.7 104.6 1.0

Reference:

C.R.Simmons, T.Macculloch, N.Stephanopoulos, H.Yan. Structural and Computational Based Approach For the Creation of A Toolbox of Immobile Holliday Junctions For Dna-Directed Self-Assembly To Be Published.
Page generated: Mon Jul 7 00:58:10 2025

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